Locus 261

Sequence ID 2L_DroMel_CAF1
Location 738,869 – 738,965
Length 96
Max. P 0.798942
window418

overview

Window 8

Location 738,869 – 738,965
Length 96
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 90.36
Mean single sequence MFE -22.98
Consensus MFE -17.20
Energy contribution -16.96
Covariance contribution -0.24
Combinations/Pair 1.11
Mean z-score -2.01
Structure conservation index 0.75
SVM decision value 0.61
SVM RNA-class probability 0.798942
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 738869 96 + 22407834
GAGUGUGUUG-AUUUU--UUUUGGUGAAUGAGUAUUAGUGGGUGGUUCGGAUACAACAUCAGGUCGUAGCAAAUACCGAAAGAAAGAAAAAAUACACAU
..(((((((.-.((((--((((((((..((..(((.....((((............)))).....))).))..)))))))))))).....))))))).. ( -22.50)
>DroSec_CAF1 364 96 + 1
GAGUGUGUUG-AUUUU--UUUUGGUGAAUGAGUAUUAGUGGGUGGUUCGGAUACAACAUCAGGUCGUGGCAAAUACCGAAAGAAAGAAAAAAUACACAU
..(((((((.-.((((--((((((((..((..(((.....((((............)))).....))).))..)))))))))))).....))))))).. ( -22.20)
>DroSim_CAF1 3331 96 + 1
GAGUGUGUUG-AUUUU--UUUUGGUGAAUGAGUAUUAGUGGGUGGGACGGAUACAACAUCAUGUCGUGGCUGAUACCUAAAAAAAGAAAAAAUACACAU
..(((((((.-.((((--((((((.......((((((((...((.(((((((.....))).)))).))))))))))))))))))))....))))))).. ( -23.41)
>DroEre_CAF1 800 99 + 1
GAGUGUGUUGCGUUUUUUUUUUGGUGAAUGAGUAUUAGUGGGUAGUACGGAUACAACAUCAGGUCGUGGCAAAUACCGAAAGAAAGAAAAAACACAUAU
..(((((((...((((((((((((((.....(((((.(((.....))).)))))........((....))...))))))))))))))...))))))).. ( -27.70)
>DroYak_CAF1 3209 94 + 1
GAGUGUGUUGCAUUUU--UUGUGGUGAAUGAGUGUUAGUGGGUAGUUCGGAUAC---AUCGGGUCGUGGCAAAUACCGAAAGAAAGAAAAAACACAUAU
..(((((((...((((--((.(((((..((((((((....((....)).)))))---.))).((....))...)))))...))))))...))))))).. ( -19.10)
>consensus
GAGUGUGUUG_AUUUU__UUUUGGUGAAUGAGUAUUAGUGGGUGGUUCGGAUACAACAUCAGGUCGUGGCAAAUACCGAAAGAAAGAAAAAAUACACAU
..(((((((...((((..((((((((.....(((((.(.........).)))))........((....))...))))))))...))))..))))))).. (-17.20 = -16.96 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:28 2006