Locus 2609

Sequence ID 2L_DroMel_CAF1
Location 7,218,507 – 7,218,614
Length 107
Max. P 0.599730
window4158

overview

Window 8

Location 7,218,507 – 7,218,614
Length 107
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 86.57
Mean single sequence MFE -24.68
Consensus MFE -17.30
Energy contribution -17.26
Covariance contribution -0.04
Combinations/Pair 1.19
Mean z-score -1.79
Structure conservation index 0.70
SVM decision value 0.13
SVM RNA-class probability 0.599730
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7218507 107 + 22407834
CCAAAUCAAAAGA-AAA-AAAACGAGAGAGAAUUUGCAGGUGUUUAUUUUCAUUUGAAUACGCAGCGUUCAAAAGUGAUUUGUGUUAUUUUCGAGUGCUGUACAGUCAA
.....(((((.((-(((-.(((((...(........)...))))).))))).)))))....(((((((((.((((((((....)))))))).)))))))))........ ( -24.00)
>DroSec_CAF1 12491 106 + 1
CCAAAUCAGAAGA-AGAAAAAACGA--CAGAAUUUGCAGGUGUUUAUUUUCAUUUGAAUACGCAGCGUUCAAAAGUGAUUUGUGUUAUUUUCGAGUGCUGUACAGUCAA
.............-.........((--(...........(((((((........)))))))(((((((((.((((((((....)))))))).)))))))))...))).. ( -24.20)
>DroSim_CAF1 12731 106 + 1
CCAAAUAAAAAGA-AGAAAAAACGA--CAGAAUUUGCAGGUGUUUAUUUUCAUUUGAAUACGCAGCGUUCAAAAGUGAUUUGUGUUAUUUUCGAGUGCUGUACAGUCAA
.............-.........((--(...........(((((((........)))))))(((((((((.((((((((....)))))))).)))))))))...))).. ( -24.20)
>DroEre_CAF1 13109 103 + 1
----AUACAAGAAUAAUAAAGCCGA--CAGGAUGUGCAGGUGUUUAUUUUCAUUUGAAUACACAGCGUUCAAAAGUGAUUUGUACUAUUUUUGUGUGCUGUACAGUCAA
----......(((.(((((((((..--((.....))..))).)))))))))..((((....((((((..((((((((........))))))))..))))))....)))) ( -23.00)
>DroYak_CAF1 12916 106 + 1
CCAAAUAGGAGGA-AACAACAACGA--GAGAAUGUGCAGGUGUUUAUUUUCAUUCAAGUACACAGCGUUCAAAAGUGAUUUGUAUUAUUUUUGAGUGCUGCACAGUCAA
((.....)).(..-..)........--..((.(((((..((((..((((......))))))))((((((((((((((((....))))))))))))))))))))).)).. ( -28.00)
>consensus
CCAAAUAAAAAGA_AAAAAAAACGA__CAGAAUUUGCAGGUGUUUAUUUUCAUUUGAAUACGCAGCGUUCAAAAGUGAUUUGUGUUAUUUUCGAGUGCUGUACAGUCAA
.............................((........(((((((........)))))))(((((((((.((((((((....)))))))).)))))))))....)).. (-17.30 = -17.26 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:50 2006