Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,210,128 – 7,210,230 |
Length | 102 |
Max. P | 0.738483 |
Location | 7,210,128 – 7,210,230 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 84.22 |
Mean single sequence MFE | -32.74 |
Consensus MFE | -19.66 |
Energy contribution | -20.57 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.09 |
Mean z-score | -3.49 |
Structure conservation index | 0.60 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738483 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7210128 102 - 22407834 UUGUGCUCGGGGACCCUUUUUC--ACCCACUUGGCAUCUGUCAGAUUUAUGACAGUGCCGCUUGACACAGUGCUGGGAUUUUUCCAGCACACCCGCCACCUUUU ..(((..((((...........--...((..(((((.((((((......)))))))))))..)).....(((((((((...))))))))).)))).)))..... ( -39.30) >DroPse_CAF1 7393 91 - 1 CCGAGCUCUG-GACCCUUUUUUGCGGCCACUUGGCAUCUGUCAGAUUUAUGACAGACUCGCUUGACACAACG----GCCUUUGAAAUG------CC--CCCACU .(((((....-..............(((....))).(((((((......)))))))...))))).......(----((.........)------))--...... ( -22.60) >DroSec_CAF1 4251 96 - 1 UUGUGCUCGGGGACCCUUUUUC--ACCCACUUGGCAUCUGUCAGAUUUAUGACAGUGCCGCUUGACACAGUGCUGGGAGUUUUCCAAG------CCCACCUACU .((((.(((((((.......))--.)))....((((.((((((......))))))))))....))))))(.(((.((......)).))------).)....... ( -30.90) >DroSim_CAF1 4267 96 - 1 UUGUGCUCGGGCACCCUUUUUC--ACCCACUUGGCAUCUGUCAGAUUUAUGACAGUGCCGCUUGACACAGUGCUGGGAUUUUUCCAAG------CCCACCUACU .((((.((((((..........--........((((.((((((......))))))))))))))))))))(.(((.(((....))).))------).)....... ( -30.36) >DroEre_CAF1 4284 93 - 1 UUGUGCUCGGGGACCCUUUUUC--ACCCACUUGGCAUCUGUCAGAUUUAUGACAGUGCCGCUUGACACAGUGCUGGGAUUUUUCCAG---------CACCUACU .((((.(((((((.......))--.)))....((((.((((((......))))))))))....))))))(((((((((...))))))---------)))..... ( -37.90) >DroYak_CAF1 4228 93 - 1 UUGUGCUCGGGGACCCUUUUUC--ACCCACUUGGCAUCUGUCAGAUUUAUGACAGUGCCGCUUGACACAGUGCUGGGAUUUUUCCCA---------CACCUUCU .((((.(((((((.......))--.)))....((((.((((((......))))))))))....))))))(((.(((((....)))))---------)))..... ( -35.40) >consensus UUGUGCUCGGGGACCCUUUUUC__ACCCACUUGGCAUCUGUCAGAUUUAUGACAGUGCCGCUUGACACAGUGCUGGGAUUUUUCCAAG______CCCACCUACU .((((.(((((..............)))....((((.((((((......))))))))))....))))))......(((....)))................... (-19.66 = -20.57 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:48 2006