Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,205,481 – 7,205,595 |
Length | 114 |
Max. P | 0.952760 |
Location | 7,205,481 – 7,205,595 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 98.77 |
Mean single sequence MFE | -37.42 |
Consensus MFE | -37.42 |
Energy contribution | -37.02 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.05 |
Mean z-score | -1.53 |
Structure conservation index | 1.00 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950208 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7205481 114 + 22407834 GAGCUGAGGGAAGUUUUCUUGGCGAGAAAUUUGCACAAUGUGGAUAUGUCUCUGCGUGGAUUUUGGAAAACUUGAAGGCUGUGUCAACUCUGGCUUGGUCCCUUCCCCAGCUGA .(((((.((((((....((.(((.(((...((((((((((..((......))..)))...(((..(.....)..)))..)))).))).))).))).))...))))))))))).. ( -36.80) >DroSec_CAF1 23086 114 + 1 GAGCUGAGGGAAGUUUUCUUGGCGAGAAAUUUGCACAAUGUGGAUAUGUCUCUGCGUGGAUUCUGGAAAACUUGAAGGCUGUGUCAACUCUGGCUUGGUCCCUUCCCCAGCUGA .(((((.((((((....((.(((.(((...((((((((((..((......))..)))(..(((.((....)).)))..))))).))).))).))).))...))))))))))).. ( -37.40) >DroSim_CAF1 36314 114 + 1 GAGCUGAGGGAAGUUUUCUUAGCGAGAAAUUUGCACAAUGUGGAUAUGUCUCUGCGUGGAUUCUGGAAAACUUGAAGGCUGUGUCAACUCUGGCUUGGUCCCUUCCCCAGCUGA .(((((.((((((....((.(((.(((...((((((((((..((......))..)))(..(((.((....)).)))..))))).))).))).))).))...))))))))))).. ( -37.40) >DroEre_CAF1 48400 114 + 1 GAGCUGAGGGAAGUUUUCUUAGCGAGAAAUUUGCACAAUGUGGAUAUGUCUCUGCGUGGAUUCUGGAAAACUUGAAGGCUGUGUCAACUCUGGCUUGGUCCCUUCCCCAGCUGA .(((((.((((((....((.(((.(((...((((((((((..((......))..)))(..(((.((....)).)))..))))).))).))).))).))...))))))))))).. ( -37.40) >DroYak_CAF1 38718 114 + 1 UAGCUGAGGGAAGUUUUCUUAGCGAGAAAUUUGCACAAUGUGGAUAUGUCUCUGCGUGGAUUCUGGAAAACUUGAAGGCUGUGUCAACUCUGGCUUGGUCCCUUCCCCAGCUGA ((((((.((((((....((.(((.(((...((((((((((..((......))..)))(..(((.((....)).)))..))))).))).))).))).))...)))))))))))). ( -38.10) >consensus GAGCUGAGGGAAGUUUUCUUAGCGAGAAAUUUGCACAAUGUGGAUAUGUCUCUGCGUGGAUUCUGGAAAACUUGAAGGCUGUGUCAACUCUGGCUUGGUCCCUUCCCCAGCUGA .(((((.((((((....((.(((.(((...((((((((((..((......))..)))(..(((.((....)).)))..))))).))).))).))).))...))))))))))).. (-37.42 = -37.02 + -0.40)
Location | 7,205,481 – 7,205,595 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 98.77 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -29.40 |
Energy contribution | -29.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.54 |
Structure conservation index | 1.00 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.952760 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7205481 114 - 22407834 UCAGCUGGGGAAGGGACCAAGCCAGAGUUGACACAGCCUUCAAGUUUUCCAAAAUCCACGCAGAGACAUAUCCACAUUGUGCAAAUUUCUCGCCAAGAAAACUUCCCUCAGCUC ..((((((((((((((.......(((.((((........)))).))).......)))..((.((((.((...(((...)))...)).))))))........)))))).))))). ( -29.04) >DroSec_CAF1 23086 114 - 1 UCAGCUGGGGAAGGGACCAAGCCAGAGUUGACACAGCCUUCAAGUUUUCCAGAAUCCACGCAGAGACAUAUCCACAUUGUGCAAAUUUCUCGCCAAGAAAACUUCCCUCAGCUC ..((((((((((((((.......(((.((((........)))).))).......)))..((.((((.((...(((...)))...)).))))))........)))))).))))). ( -29.04) >DroSim_CAF1 36314 114 - 1 UCAGCUGGGGAAGGGACCAAGCCAGAGUUGACACAGCCUUCAAGUUUUCCAGAAUCCACGCAGAGACAUAUCCACAUUGUGCAAAUUUCUCGCUAAGAAAACUUCCCUCAGCUC ..((((((((((((((.......(((.((((........)))).))).......)))..((.((((.((...(((...)))...)).))))))........)))))).))))). ( -29.44) >DroEre_CAF1 48400 114 - 1 UCAGCUGGGGAAGGGACCAAGCCAGAGUUGACACAGCCUUCAAGUUUUCCAGAAUCCACGCAGAGACAUAUCCACAUUGUGCAAAUUUCUCGCUAAGAAAACUUCCCUCAGCUC ..((((((((((((((.......(((.((((........)))).))).......)))..((.((((.((...(((...)))...)).))))))........)))))).))))). ( -29.44) >DroYak_CAF1 38718 114 - 1 UCAGCUGGGGAAGGGACCAAGCCAGAGUUGACACAGCCUUCAAGUUUUCCAGAAUCCACGCAGAGACAUAUCCACAUUGUGCAAAUUUCUCGCUAAGAAAACUUCCCUCAGCUA ..((((((((((((((.......(((.((((........)))).))).......)))..((.((((.((...(((...)))...)).))))))........)))))).))))). ( -30.04) >consensus UCAGCUGGGGAAGGGACCAAGCCAGAGUUGACACAGCCUUCAAGUUUUCCAGAAUCCACGCAGAGACAUAUCCACAUUGUGCAAAUUUCUCGCUAAGAAAACUUCCCUCAGCUC ..((((((((((((((.......(((.((((........)))).))).......)))..((.((((.((...(((...)))...)).))))))........)))))).))))). (-29.40 = -29.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:44 2006