Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,204,516 – 7,204,676 |
Length | 160 |
Max. P | 0.992155 |
Location | 7,204,516 – 7,204,618 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 93.24 |
Mean single sequence MFE | -20.82 |
Consensus MFE | -17.48 |
Energy contribution | -17.68 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.84 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667448 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7204516 102 + 22407834 UAAAUGAGUUAAACACUGUUUGGUAUCGCAUAGUUUACGUUUAUUUUGUUUGAGAAAUGUCUAGAACACCAAUAAAGUAAAUUCAGUAGCAAACAAGUUGGA ...........(((..((((((.(((.(...(((((((.((((((.(((((.(((....))).)))))..)))))))))))))).))).)))))).)))... ( -18.70) >DroSec_CAF1 22129 102 + 1 UUAAUAAGCUAAAUACUGUUUGGUAUCGCAUAGUUUACGUUUAUUUUGUUUGAGAAAUGUCUAGAACACCAAUAAAGUAAAUUCAGUAGCAAACAAGUGGGG .............(((((((((.(((.(...(((((((.((((((.(((((.(((....))).)))))..)))))))))))))).))).))))).))))... ( -20.20) >DroSim_CAF1 35358 102 + 1 UUAAUAAGUUAAACACUGUUUGGUAUCGCAUAGUUUACGUUUAUUUUGUUUGAGAAAUGUCUAGAACACCAAUAAAGUAAAUUCAGUAGCAAACAAGUGGGG .............(((((((((.(((.(...(((((((.((((((.(((((.(((....))).)))))..)))))))))))))).))).))))).))))... ( -22.50) >DroEre_CAF1 47443 102 + 1 UAAAAAAGUCAACCUUUGUUUGGUAUCGCAUAGUUUACGUUUAUUUUGUUUGAGAAAUGUCUAGAACACCAAUAAAGUAAAUUCAGUAGCAAACAAGUGGGA ............((((((((((.(((.(...(((((((.((((((.(((((.(((....))).)))))..)))))))))))))).))).)))))))).)).. ( -23.00) >DroYak_CAF1 37759 102 + 1 UAAAAAACUUUACCCUUAUUUGGUAUCGCAUAGUUUACGUUUAUUUUGUUUGAGAAAUGUCUAGAACACCAAUAAAGUAAAUUCAGUAGCAAACAAGUGGGA ............(((((.((((.(((.(...(((((((.((((((.(((((.(((....))).)))))..)))))))))))))).))).)))).))).)).. ( -19.70) >consensus UAAAUAAGUUAAACACUGUUUGGUAUCGCAUAGUUUACGUUUAUUUUGUUUGAGAAAUGUCUAGAACACCAAUAAAGUAAAUUCAGUAGCAAACAAGUGGGA ................((((((.(((.(...(((((((.((((((.(((((.(((....))).)))))..)))))))))))))).))).))))))....... (-17.48 = -17.68 + 0.20)
Location | 7,204,516 – 7,204,618 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 93.24 |
Mean single sequence MFE | -16.56 |
Consensus MFE | -14.92 |
Energy contribution | -14.52 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.35 |
Structure conservation index | 0.90 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.855388 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7204516 102 - 22407834 UCCAACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCUAGACAUUUCUCAAACAAAAUAAACGUAAACUAUGCGAUACCAAACAGUGUUUAACUCAUUUA ...((((((((((.((.((..(((((((((((..((((..(((....)))..)))).)))))).))))).....)).)).))))))).)))........... ( -15.80) >DroSec_CAF1 22129 102 - 1 CCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCUAGACAUUUCUCAAACAAAAUAAACGUAAACUAUGCGAUACCAAACAGUAUUUAGCUUAUUAA ....(((.(((((.((.((..(((((((((((..((((..(((....)))..)))).)))))).))))).....)).)).)))))))).............. ( -14.90) >DroSim_CAF1 35358 102 - 1 CCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCUAGACAUUUCUCAAACAAAAUAAACGUAAACUAUGCGAUACCAAACAGUGUUUAACUUAUUAA ...((((.(((((.((.((..(((((((((((..((((..(((....)))..)))).)))))).))))).....)).)).)))))))))............. ( -17.40) >DroEre_CAF1 47443 102 - 1 UCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCUAGACAUUUCUCAAACAAAAUAAACGUAAACUAUGCGAUACCAAACAAAGGUUGACUUUUUUA ..((..(((((((.((.((..(((((((((((..((((..(((....)))..)))).)))))).))))).....)).)).))))))).))............ ( -16.00) >DroYak_CAF1 37759 102 - 1 UCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCUAGACAUUUCUCAAACAAAAUAAACGUAAACUAUGCGAUACCAAAUAAGGGUAAAGUUUUUUA ..((.((((((((.((.((..(((((((((((..((((..(((....)))..)))).)))))).))))).....)).)).))))))))))............ ( -18.70) >consensus UCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCUAGACAUUUCUCAAACAAAAUAAACGUAAACUAUGCGAUACCAAACAGUGUUUAACUUAUUUA ......(((((((.((.((..(((((((((((..((((..(((....)))..)))).)))))).))))).....)).)).)))))))............... (-14.92 = -14.52 + -0.40)
Location | 7,204,541 – 7,204,658 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 98.21 |
Mean single sequence MFE | -25.50 |
Consensus MFE | -24.64 |
Energy contribution | -24.68 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.02 |
Mean z-score | -1.60 |
Structure conservation index | 0.97 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.966334 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7204541 117 + 22407834 UCGCAUAGUUUACGUUUAUUUUGUUUGAGAAAUGUCUAGAACACCAAUAAAGUAAAUUCAGUAGCAAACAAGUUGGAUUAGUAAUAUUAAAUAUCCACUUGUCGUUCGCAUUUAUUG ..((..(((((((.((((((.(((((.(((....))).)))))..)))))))))))))..(.(((..((((((.((((...((....))...)))))))))).))))))........ ( -23.10) >DroSec_CAF1 22154 117 + 1 UCGCAUAGUUUACGUUUAUUUUGUUUGAGAAAUGUCUAGAACACCAAUAAAGUAAAUUCAGUAGCAAACAAGUGGGGUUAGUAUUAUUAAAUAUCCACUUGUCGUUCGCAUUUAUUG ..((..(((((((.((((((.(((((.(((....))).)))))..)))))))))))))..(.(((..(((((((((.(((((...)))))...))))))))).))))))........ ( -26.60) >DroSim_CAF1 35383 117 + 1 UCGCAUAGUUUACGUUUAUUUUGUUUGAGAAAUGUCUAGAACACCAAUAAAGUAAAUUCAGUAGCAAACAAGUGGGGUUAGUAUUAUUAAAUAUCCACUUGUCGUUCGCAUUUAUUG ..((..(((((((.((((((.(((((.(((....))).)))))..)))))))))))))..(.(((..(((((((((.(((((...)))))...))))))))).))))))........ ( -26.60) >DroEre_CAF1 47468 117 + 1 UCGCAUAGUUUACGUUUAUUUUGUUUGAGAAAUGUCUAGAACACCAAUAAAGUAAAUUCAGUAGCAAACAAGUGGGAUUAGUACUAUUAAAUAUCCACUUGUCGCUCGCAUUUAUUG ..((..(((((((.((((((.(((((.(((....))).)))))..)))))))))))))..(.(((..(((((((((.(((((...)))))...))))))))).))))))........ ( -26.80) >DroYak_CAF1 37784 117 + 1 UCGCAUAGUUUACGUUUAUUUUGUUUGAGAAAUGUCUAGAACACCAAUAAAGUAAAUUCAGUAGCAAACAAGUGGGAUUAGUAUUAUUAAAUAUCCACUUGUCGUUCGCAUUUAUUG ..((..(((((((.((((((.(((((.(((....))).)))))..)))))))))))))..(.(((..(((((((((.(((((...)))))...))))))))).))))))........ ( -24.40) >consensus UCGCAUAGUUUACGUUUAUUUUGUUUGAGAAAUGUCUAGAACACCAAUAAAGUAAAUUCAGUAGCAAACAAGUGGGAUUAGUAUUAUUAAAUAUCCACUUGUCGUUCGCAUUUAUUG ..((..(((((((.((((((.(((((.(((....))).)))))..)))))))))))))..(.(((..(((((((((.(((((...)))))...))))))))).))))))........ (-24.64 = -24.68 + 0.04)
Location | 7,204,541 – 7,204,658 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 98.21 |
Mean single sequence MFE | -23.20 |
Consensus MFE | -21.33 |
Energy contribution | -21.53 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.92 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7204541 117 - 22407834 CAAUAAAUGCGAACGACAAGUGGAUAUUUAAUAUUACUAAUCCAACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCUAGACAUUUCUCAAACAAAAUAAACGUAAACUAUGCGA ........((((((((....(((((..............)))))..)))))))).......(((((((((((..((((..(((....)))..)))).)))))).)))))........ ( -21.74) >DroSec_CAF1 22154 117 - 1 CAAUAAAUGCGAACGACAAGUGGAUAUUUAAUAAUACUAACCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCUAGACAUUUCUCAAACAAAAUAAACGUAAACUAUGCGA .......((((...(((((((((...................)))))))))..........(((((((((((..((((..(((....)))..)))).)))))).)))))...)))). ( -22.61) >DroSim_CAF1 35383 117 - 1 CAAUAAAUGCGAACGACAAGUGGAUAUUUAAUAAUACUAACCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCUAGACAUUUCUCAAACAAAAUAAACGUAAACUAUGCGA .......((((...(((((((((...................)))))))))..........(((((((((((..((((..(((....)))..)))).)))))).)))))...)))). ( -22.61) >DroEre_CAF1 47468 117 - 1 CAAUAAAUGCGAGCGACAAGUGGAUAUUUAAUAGUACUAAUCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCUAGACAUUUCUCAAACAAAAUAAACGUAAACUAUGCGA .......((((((((((((((((...................))))))).)))))......(((((((((((..((((..(((....)))..)))).)))))).)))))...)))). ( -26.41) >DroYak_CAF1 37784 117 - 1 CAAUAAAUGCGAACGACAAGUGGAUAUUUAAUAAUACUAAUCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCUAGACAUUUCUCAAACAAAAUAAACGUAAACUAUGCGA .......((((...(((((((((...................)))))))))..........(((((((((((..((((..(((....)))..)))).)))))).)))))...)))). ( -22.61) >consensus CAAUAAAUGCGAACGACAAGUGGAUAUUUAAUAAUACUAAUCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCUAGACAUUUCUCAAACAAAAUAAACGUAAACUAUGCGA .......((((...(((((((((...................)))))))))..........(((((((((((..((((..(((....)))..)))).)))))).)))))...)))). (-21.33 = -21.53 + 0.20)
Location | 7,204,578 – 7,204,676 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 96.43 |
Mean single sequence MFE | -21.78 |
Consensus MFE | -18.73 |
Energy contribution | -18.69 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.80 |
Structure conservation index | 0.86 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939443 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7204578 98 - 22407834 CAGAAGAGCCAUAAGAAGCAAUAAAUGCGAACGACAAGUGGAUAUUUAAUAUUACUAAUCCAACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCU .((((..((((.(((..(((.....)))....(((((((((((..............)))).)))))))..............)))...)))).)))) ( -19.64) >DroSec_CAF1 22191 98 - 1 CAGGAAGGCCAUAAGAAGCAAUAAAUGCGAACGACAAGUGGAUAUUUAAUAAUACUAACCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCU ..((((.((((.(((..(((.....)))....(((((((((...................)))))))))..............)))...)))).)))) ( -23.31) >DroSim_CAF1 35420 98 - 1 CAGGAAAGCCAUAAGAAGCAAUAAAUGCGAACGACAAGUGGAUAUUUAAUAAUACUAACCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCU ..((((.((((.(((..(((.....)))....(((((((((...................)))))))))..............)))...)))).)))) ( -21.21) >DroEre_CAF1 47505 98 - 1 CAGGAAAGCCAUAAGAAGCAAUAAAUGCGAGCGACAAGUGGAUAUUUAAUAGUACUAAUCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCU ..((((.((((.(((..(((.....))).((((((((((((...................))))))).)))))..........)))...)))).)))) ( -25.01) >DroYak_CAF1 37821 98 - 1 CAGAAAAGCCAUAAGAAGCAAUAAAUGCGAACGACAAGUGGAUAUUUAAUAAUACUAAUCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCU .((((..((((.(((..(((.....)))....(((((((((...................)))))))))..............)))...)))).)))) ( -19.71) >consensus CAGGAAAGCCAUAAGAAGCAAUAAAUGCGAACGACAAGUGGAUAUUUAAUAAUACUAAUCCCACUUGUUUGCUACUGAAUUUACUUUAUUGGUGUUCU .((((..((((.(((..(((.....)))....(((((((((...................)))))))))..............)))...)))).)))) (-18.73 = -18.69 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:42 2006