Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,201,566 – 7,201,662 |
Length | 96 |
Max. P | 0.994818 |
Location | 7,201,566 – 7,201,662 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 91.46 |
Mean single sequence MFE | -30.38 |
Consensus MFE | -28.00 |
Energy contribution | -27.84 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.12 |
Mean z-score | -1.87 |
Structure conservation index | 0.92 |
SVM decision value | 2.51 |
SVM RNA-class probability | 0.994818 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7201566 96 + 22407834 UUUGAUACGGACACAUUGGAAAAGGGAUAUACGCGUCAGUUGAUGACGCUGGCAAGUGAAUUGCGGCUCAGUCUGGCGGGUGUCCAAGGAAAUGCA ........((((((.(..((...(((......((((((.....))))))..((((.....))))..)))..))..)...))))))........... ( -29.30) >DroSec_CAF1 19133 96 + 1 UUUGAUACGGACACAUCGGAAAAGGGAUAUACGCGUCAGUUGAUGACGCUGGCAAGUGAAUUGCGGCUCAGUCUGGCGGGUGUCCAAGGAAAUGCA ........((((((.(((((...(((......((((((.....))))))..((((.....))))..)))..)))))...))))))........... ( -30.80) >DroSim_CAF1 32336 96 + 1 UUUGAUACGGACACAUCGGAAAAGGGAUAUACGCGUCAGUUGAUGACGCUGGCAAGUGAAUUGCGGCUCAGUCUGGCGGGUGUCCAAGGAAAUGCA ........((((((.(((((...(((......((((((.....))))))..((((.....))))..)))..)))))...))))))........... ( -30.80) >DroEre_CAF1 44091 96 + 1 UUUGAUACGGACACAUUGGAAAAGGGAUAUACGCGUCAUUUGAUGACGCAAGCAGCUGAGUUGCGGCUCAGUCUGUUGAGUGUCCAUGGAAAUGCA ........((((((..................(((((((...))))))).(((((((((((....)))))).)))))..))))))........... ( -34.50) >DroYak_CAF1 34697 96 + 1 UUUGAUACGGACACAUCGGAAAAGGGAUAUUCGCGUCAUUUGAUGACGCUAGCAAGUGAAUGGCGGCUCUGUCUGGUAAGUGUUCAAGAAAUUGCA ........((((((((((((..((((.((((((((((((...)))))(....)..)))))))....)))).))))))..))))))........... ( -26.50) >consensus UUUGAUACGGACACAUCGGAAAAGGGAUAUACGCGUCAGUUGAUGACGCUGGCAAGUGAAUUGCGGCUCAGUCUGGCGGGUGUCCAAGGAAAUGCA ........((((((.(((((...(((......((((((.....))))))..((((.....))))..)))..)))))...))))))........... (-28.00 = -27.84 + -0.16)
Location | 7,201,566 – 7,201,662 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 91.46 |
Mean single sequence MFE | -22.24 |
Consensus MFE | -19.12 |
Energy contribution | -19.72 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.86 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898649 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7201566 96 - 22407834 UGCAUUUCCUUGGACACCCGCCAGACUGAGCCGCAAUUCACUUGCCAGCGUCAUCAACUGACGCGUAUAUCCCUUUUCCAAUGUGUCCGUAUCAAA ...........((((((...............((((.....))))..((((((.....))))))..................))))))........ ( -21.40) >DroSec_CAF1 19133 96 - 1 UGCAUUUCCUUGGACACCCGCCAGACUGAGCCGCAAUUCACUUGCCAGCGUCAUCAACUGACGCGUAUAUCCCUUUUCCGAUGUGUCCGUAUCAAA ...........((((((.((..(((..((...((((.....))))..((((((.....)))))).....))..)))..))..))))))........ ( -22.00) >DroSim_CAF1 32336 96 - 1 UGCAUUUCCUUGGACACCCGCCAGACUGAGCCGCAAUUCACUUGCCAGCGUCAUCAACUGACGCGUAUAUCCCUUUUCCGAUGUGUCCGUAUCAAA ...........((((((.((..(((..((...((((.....))))..((((((.....)))))).....))..)))..))..))))))........ ( -22.00) >DroEre_CAF1 44091 96 - 1 UGCAUUUCCAUGGACACUCAACAGACUGAGCCGCAACUCAGCUGCUUGCGUCAUCAAAUGACGCGUAUAUCCCUUUUCCAAUGUGUCCGUAUCAAA .........((((((((....(((.(((((......))))))))...(((((((...)))))))..................))))))))...... ( -30.30) >DroYak_CAF1 34697 96 - 1 UGCAAUUUCUUGAACACUUACCAGACAGAGCCGCCAUUCACUUGCUAGCGUCAUCAAAUGACGCGAAUAUCCCUUUUCCGAUGUGUCCGUAUCAAA .........((((.....(((..((((.(..((..............(((((((...)))))))(((........))))).).)))).))))))). ( -15.50) >consensus UGCAUUUCCUUGGACACCCGCCAGACUGAGCCGCAAUUCACUUGCCAGCGUCAUCAACUGACGCGUAUAUCCCUUUUCCGAUGUGUCCGUAUCAAA ..........(((((((...............((((.....))))..((((((.....))))))..................)))))))....... (-19.12 = -19.72 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:37 2006