| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,199,385 – 7,199,502 |
| Length | 117 |
| Max. P | 0.997156 |
| Location | 7,199,385 – 7,199,502 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 68.49 |
| Mean single sequence MFE | -18.54 |
| Consensus MFE | -12.20 |
| Energy contribution | -13.95 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.66 |
| SVM decision value | 2.81 |
| SVM RNA-class probability | 0.997156 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7199385 117 + 22407834 UCCCGGCUGUCGCAUGCAAAAUUUUAGAAUGCAGACACGAAAGUAAAAGGAAAGCCAACAACACGAACUGUGAGAAAUGCAA-AAAUGUUUAAAUUAAGAAAGAAAAAAAUAAAAACA ....(((((((((((.............)))).)))((....))........)))).....(((.....)))..........-................................... ( -16.52) >DroSim_CAF1 30554 114 + 1 UCCCGGCUGUCGCAUGCAAAAUUUCAGAAUGCAGACACGAAAGUAAAAGGAAAGCCAACAACACGAACUGGGAGNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--- (((((((((((((((.............)))).)))((....))........))))..(.....)....)))).........-................................--- ( -19.02) >DroEre_CAF1 41847 104 + 1 UGCCGGCAGUCGCAUGCAAAUUUGCAGUAUGCAAGCACGAAAGUAAAAGGUAAACCAA--ACCAAAACUGGGAGAAAGGCAA-AAAUGUUUAAAUUAAGAAAAAA-----------CA ((((((.....((((((.........))))))....((....))..........))..--.(((....)))......)))).-......................-----------.. ( -19.60) >DroYak_CAF1 32376 108 + 1 UCCCGGCUGUCGCAUGCAAAAUUUCAGU-UGCAAGCACGAAAGUAAAAGGUAAACCAAUAACACGAACUGGGCGAAAUGCAAAAAAUGUUUAAAUUAAGAAAAAA---------AGCA .(((((...((((.(((((........)-)))).))((....))....((....))........)).))))).................................---------.... ( -19.00) >consensus UCCCGGCUGUCGCAUGCAAAAUUUCAGAAUGCAAACACGAAAGUAAAAGGAAAACCAACAACACGAACUGGGAGAAAUGCAA_AAAUGUUUAAAUUAAGAAAAAA___________CA ((((((..(((((((((.........)))))).)))((....))....((....))...........))))))............................................. (-12.20 = -13.95 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:35 2006