| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 738,202 – 738,294 |
| Length | 92 |
| Max. P | 0.598351 |
| Location | 738,202 – 738,294 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 85.80 |
| Mean single sequence MFE | -32.05 |
| Consensus MFE | -25.79 |
| Energy contribution | -26.10 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.598351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 738202 92 + 22407834 GAGAAGUCCUCCAUCGUGGUGUCCAUGUCCAUGUCCAUGUCCAUUGGGGGUGCCAGCGGGCAUGUCCUGAAGGGAUAGUCAUCAGAUUGGUU ..........(((((.(((((....(((((..(..(((((((.((((.....)))).)))))))..).....)))))..))))))).))).. ( -29.80) >DroSim_CAF1 2667 86 + 1 GAGAAGUCCCCCAUCGUGGUGUCCAUGU------CCAUGUCCAUUGGGGGUGCCAGCGGGCAUGUCCUGAAGGGAUAGUCAUCAGAUUGGCA .......((((((.(((((.........------))))).....))))))(((((((.(((.(((((.....))))))))....).)))))) ( -31.40) >DroEre_CAF1 145 80 + 1 GAGGAGUCCGCCAUCGUGGUGUCCGU------------GUCCGUUGGGGGUGCCAGCGGGCAUGUCCUGCAGGGAUGGUCAUCAGAUUGGUA .........((((((.(((((.((((------------(((((((((.....)))))))))))((((.....)))))).))))))).)))). ( -36.30) >DroYak_CAF1 2551 80 + 1 GAGAAGUCCUCCAUCGUGGUGUCCAU------------GUCCGUUGGGAGUGCCAGCGGGCAUGUCCUGAAGGGAUAGUCAUCAGACUGGUA .....(((((...(((.((....(((------------(((((((((.....)))))))))))).))))).)))))((((....)))).... ( -30.70) >consensus GAGAAGUCCUCCAUCGUGGUGUCCAU____________GUCCAUUGGGGGUGCCAGCGGGCAUGUCCUGAAGGGAUAGUCAUCAGAUUGGUA ..........(((((.(((((.(...............(((((((((.....))))))))).(((((.....)))))).))))))).))).. (-25.79 = -26.10 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:27 2006