Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 92,598 – 92,713 |
Length | 115 |
Max. P | 0.870837 |
Location | 92,598 – 92,713 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.26 |
Mean single sequence MFE | -24.08 |
Consensus MFE | -15.26 |
Energy contribution | -14.82 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.22 |
Mean z-score | -1.70 |
Structure conservation index | 0.63 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.765449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 92598 115 + 22407834 AC---UGUCUGGAUCGCUA-AAAAUAAUCAAUAACUACACACCUCAAAAGGUGCUAGACAGUUAAU-UUAUACGGUUUCAUUCGUAUAUGUAUACUAAAAAUAGUACAAAGCGUUGAAUA ((---(((((((.......-....((.....))......(((((....))))))))))))))....-.(((((((......)))))))....(((((....))))).............. ( -22.00) >DroPse_CAF1 86597 114 + 1 CC---CGUCUGGCACGCGGCAAAGUAAUCAAAA-AUGAACACCUCGAAAGGUGCCAGACAGUUA-U-UAAUAUGGUUUUAUUCAUAUGAGUAUAAUAAAAAUAGCACAAAUCUGCAGAUA ..---.(((((((((((......))........-..........(....)))))))))).((((-(-..((((((......))))))....))))).......(((......)))..... ( -27.30) >DroEre_CAF1 72393 115 + 1 AC---UGUCUGGAUCGCUA-AAAAUAAUCAAAAACUCCACACCUCGAAAGGUGCUAGACAGUUAAU-UUAUACGGUUUUAUUCGUAUAUGUAUACUAAAAAUAGUACAAAGCGUUGAAUA ((---(((((((.......-...................(((((....))))))))))))))....-.(((((((......)))))))....(((((....))))).............. ( -21.86) >DroYak_CAF1 65285 118 + 1 ACAUUUGUCUGGAUCGCCA-AAAAUAAUCAAUAACUCCACACCUCGAAAGGUGCUAGACAGUUAAU-UUAUACGGUUUCAUUCGUAUAUGUAUACUAAAAAUAGUACAAAGCGUUGAAUA .........(((....)))-.......(((((............(....)((((((...(((....-.(((((((......))))))).....))).....)))))).....)))))... ( -20.30) >DroAna_CAF1 75856 112 + 1 AC---CGUCUGGCGAUCUGGAGAACAAUCAGG-CCCCAACACCUCGAAAGGUGCUAGACAGUUAAUUUUAUAUGG----AUUCGUAUGCGCAUACUAAAAAUAGUAUAAUGCUCCAGCUA ..---.((((((((..((((.......)))).-.).....((((....))))))))))).............(((----(...((((....((((((....)))))).)))))))).... ( -25.70) >DroPer_CAF1 87450 114 + 1 CC---CGUCUGGCACGCGGCAAAGUAAUCAAAA-AUGAACACCUCGAAAGGUGCCAGACAGUUA-U-UAAUAUGGUUUUAUUCAUAUGAGUAUAAUAAAAAUAGCACAAAUCUGCAGAUA ..---.(((((((((((......))........-..........(....)))))))))).((((-(-..((((((......))))))....))))).......(((......)))..... ( -27.30) >consensus AC___CGUCUGGAUCGCUA_AAAAUAAUCAAAAACUCAACACCUCGAAAGGUGCUAGACAGUUAAU_UUAUACGGUUUUAUUCGUAUAUGUAUACUAAAAAUAGUACAAAGCGUCAAAUA ......((((((...........................(((((....))))))))))).........(((((((......)))))))................................ (-15.26 = -14.82 + -0.44)
Location | 92,598 – 92,713 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.26 |
Mean single sequence MFE | -29.80 |
Consensus MFE | -14.47 |
Energy contribution | -13.88 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.21 |
Mean z-score | -2.58 |
Structure conservation index | 0.49 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 92598 115 - 22407834 UAUUCAACGCUUUGUACUAUUUUUAGUAUACAUAUACGAAUGAAACCGUAUAA-AUUAACUGUCUAGCACCUUUUGAGGUGUGUAGUUAUUGAUUAUUUU-UAGCGAUCCAGACA---GU ............(((((((....)))))))..((((((........)))))).-....(((((((.((((((....))))))...((((...........-)))).....)))))---)) ( -27.00) >DroPse_CAF1 86597 114 - 1 UAUCUGCAGAUUUGUGCUAUUUUUAUUAUACUCAUAUGAAUAAAACCAUAUUA-A-UAACUGUCUGGCACCUUUCGAGGUGUUCAU-UUUUGAUUACUUUGCCGCGUGCCAGACG---GG .....(((......))).....((((((.....(((((........)))))))-)-)))(((((((((((....(((((((.(((.-...))).)))))))....))))))))))---). ( -33.40) >DroEre_CAF1 72393 115 - 1 UAUUCAACGCUUUGUACUAUUUUUAGUAUACAUAUACGAAUAAAACCGUAUAA-AUUAACUGUCUAGCACCUUUCGAGGUGUGGAGUUUUUGAUUAUUUU-UAGCGAUCCAGACA---GU ............(((((((....)))))))..((((((........)))))).-....(((((((.((((((....))))))(((....((((......)-)))...))))))))---)) ( -29.20) >DroYak_CAF1 65285 118 - 1 UAUUCAACGCUUUGUACUAUUUUUAGUAUACAUAUACGAAUGAAACCGUAUAA-AUUAACUGUCUAGCACCUUUCGAGGUGUGGAGUUAUUGAUUAUUUU-UGGCGAUCCAGACAAAUGU ............(((((((....)))))))..((((((........)))))).-......(((((.((((((....))))))(((.(..(..(......)-..)..)))))))))..... ( -26.10) >DroAna_CAF1 75856 112 - 1 UAGCUGGAGCAUUAUACUAUUUUUAGUAUGCGCAUACGAAU----CCAUAUAAAAUUAACUGUCUAGCACCUUUCGAGGUGUUGGGG-CCUGAUUGUUCUCCAGAUCGCCAGACG---GU ....((((....(((((((....)))))))((....))..)----)))..........((((((((((((((....)))))))..((-(..((((........))))))))))))---)) ( -29.70) >DroPer_CAF1 87450 114 - 1 UAUCUGCAGAUUUGUGCUAUUUUUAUUAUACUCAUAUGAAUAAAACCAUAUUA-A-UAACUGUCUGGCACCUUUCGAGGUGUUCAU-UUUUGAUUACUUUGCCGCGUGCCAGACG---GG .....(((......))).....((((((.....(((((........)))))))-)-)))(((((((((((....(((((((.(((.-...))).)))))))....))))))))))---). ( -33.40) >consensus UAUCCAAAGCUUUGUACUAUUUUUAGUAUACACAUACGAAUAAAACCAUAUAA_AUUAACUGUCUAGCACCUUUCGAGGUGUGGAGUUUUUGAUUAUUUU_CAGCGAGCCAGACA___GU ............(((((((....)))))))...(((((........))))).........(((((.((((((....)))))).....................(.....))))))..... (-14.47 = -13.88 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:34 2006