Locus 2598

Sequence ID 2L_DroMel_CAF1
Location 7,198,272 – 7,198,369
Length 97
Max. P 0.718219
window4139

overview

Window 9

Location 7,198,272 – 7,198,369
Length 97
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.57
Mean single sequence MFE -18.26
Consensus MFE -8.87
Energy contribution -8.90
Covariance contribution 0.03
Combinations/Pair 1.27
Mean z-score -2.19
Structure conservation index 0.49
SVM decision value 0.39
SVM RNA-class probability 0.718219
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7198272 97 + 22407834
CC---ACUCCCAUAUUUACCUACUUCCUCC-C-UUUUUCCGCCCAUUUAUGGGCCAUUUCCUUUCUGCAUCUGCUGGGUGCCCGGCUAAGAGUAUUUUUAGA
..---((((.....................-.-.......(((((....)))))..................(((((....)))))...))))......... ( -20.20)
>DroSec_CAF1 15892 97 + 1
CC---ACUCCCAUAUUUUCCUACUUCCUCC-C-UUUUUCCGCCCAUUUAUGGGCCAUUUCCUUUCUGCAUCUACUUGCUCCCCGGCUAUGAGUAUUUUUAGA
..---...............((((......-.-.......(((((....)))))(((..((.....(((......))).....))..)))))))........ ( -15.30)
>DroSim_CAF1 29408 97 + 1
CC---ACUCCCAUAUUUUGCUACUUCCUCC-C-UUUUUCCGCCCAUCUAUGGGCAAUUUCCUUUCUGCAUCUACUUGGUCCCCGGCUAUGAGUAUUUUUAGA
..---.........................-.-.......(((((....))))).........((((.(..((((((((.....)))..)))))..).)))) ( -14.70)
>DroEre_CAF1 40645 100 + 1
CUGGGAGUGGUCUAUUUUCCAAAGUCCUCC-C-UUUUUCCGCCCAGUUAUGGGCCAUUUCCUUUCUGCAUCUGUUGGGUGCCCGACUAAAAGUAUUUUUAGA
..((((((((........))).....))))-)-.......(((((....)))))............(((((.....)))))....((((((....)))))). ( -25.10)
>DroYak_CAF1 31191 98 + 1
CC---ACUCCCAUAUUUUCCUACUUCCUCC-CGUUUUUUUGCCCAUUUAUGGGCCAUUUCCUUUCUGCAUCUGUUAGGUGCCCGACUAAAAGUAUUUUUAGA
..---...............(((((.....-((.......(((((....)))))............(((((.....))))).)).....)))))........ ( -15.10)
>DroAna_CAF1 16730 91 + 1
UCU--GGGCCCAUCCUUCCUUCCUUCCUUGGC-CUUUUCCGCCCAGUUAUGGGCCAUUUCCU----GCAGAUACCUA----CCAUGUAGAGCUAUUUUUAGA
...--.(((((((.............((.(((-.......))).))..))))))).....((----(.(((((((((----(...)))).).))))).))). ( -19.16)
>consensus
CC___ACUCCCAUAUUUUCCUACUUCCUCC_C_UUUUUCCGCCCAUUUAUGGGCCAUUUCCUUUCUGCAUCUACUUGGUGCCCGGCUAAAAGUAUUUUUAGA
........................................(((((....)))))...............................((((((....)))))). ( -8.87 =  -8.90 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:33 2006