Locus 2597

Sequence ID	2L_DroMel_CAF1
Location	7,194,113 – 7,194,205
Length	92
Max. P	0.679317

overview

Window 7

Location	7,194,113 – 7,194,205
Length	92
Sequences	6
Columns	101
Reading direction	forward
Mean pairwise identity	85.68
Mean single sequence MFE	-40.32
Consensus MFE	-32.08
Energy contribution	-33.30
Covariance contribution	1.22
Combinations/Pair	1.19
Mean z-score	-1.71
Structure conservation index	0.80
SVM decision value	-0.04
SVM RNA-class probability	0.512350
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7194113 92 + 22407834
CAGGACUUCGGGGCGCAGCGGCAGCGCAGCCGGCGUCGCUGCCGCCGCGGGCAGUGCGACUGUCUAU--UUUUUUUCACCCACGAAGUGCGUUU-------
..(.((((((((((((.(((((((((..(....)..))))))))).)))(((((.....)))))...--.........))).)))))).)....------- ( -46.00)
>DroSec_CAF1 11816 92 + 1
CAGGACUUCGAGGCGCAGCGGCAGCGCAGCCGGCAUCGCUGCCGCCGCGGGCAGUGCGACUGUCAAU--UUUUUUUCACCCACGAAGUGCGUUU-------
..(.((((((.(((((.(((((((((..(....)..))))))))).)))(((((.....)))))...--..........)).)))))).)....------- ( -42.50)
>DroSim_CAF1 25338 92 + 1
CAGGACUUCAAGGCGCAGUAGCAGCGCAGCCGGCGUCGCUGCCGCCGCGGGCGGUGCGACUGUCUAU--UUUUUUUCACCCACGAAGUGCGUUU-------
..(.(((((..(((((.((....)))).)))((((((((.((((((...))))))))))).)))...--..............))))).)....------- ( -35.80)
>DroEre_CAF1 34246 91 + 1
CAGGACUUCGGGGCGCAGCGGCAGCGCAGCCGGCGUCGCUGCCGCCGCGGGCAGUGCGACUGUCUAU--UUU-UUUCACCCACGAAGUGCGUUU-------
..(.((((((((((((.(((((((((..(....)..))))))))).)))(((((.....)))))...--...-.....))).)))))).)....------- ( -46.00)
>DroYak_CAF1 26711 92 + 1
CAGGACUUCGGGGCGCAGCAGCAGCGCAGCCGGCGUCGCUGCCGCCGCGGGCAUUGCGACUGUCUAU--UUUUUUUCACCCACGAAGUGCGUUU-------
..(.(((((((((.((.(((((.((((.....)))).))))).))...(((((.......)))))..--.........))).)))))).)....------- ( -36.50)
>DroAna_CAF1 12484 100 + 1
CAGGACUUCGUG-AGCAGCGGCAGCGCAGUAGGCGUCUCUGCUGUCGCGGGCAGAGAGGUUGACUGCUCUUUUUUUCUACCAAAAACUGCGUGCCUAUCGA
...(.((.(...-.).)))(((((((((((..((.((((((((......)))))))).))..)))))...(((((......)))))..)).))))...... ( -35.10)
>consensus
CAGGACUUCGGGGCGCAGCGGCAGCGCAGCCGGCGUCGCUGCCGCCGCGGGCAGUGCGACUGUCUAU__UUUUUUUCACCCACGAAGUGCGUUU_______
..(.((((((.(((((.(((((((((..(....)..))))))))).)))(((((.....)))))...............)).)))))).)........... (-32.08 = -33.30 +   1.22)

alignment

secondary structure

dotplot

Window 8

Location	7,194,113 – 7,194,205
Length	92
Sequences	6
Columns	101
Reading direction	reverse
Mean pairwise identity	85.68
Mean single sequence MFE	-38.57
Consensus MFE	-31.39
Energy contribution	-32.37
Covariance contribution	0.98
Combinations/Pair	1.19
Mean z-score	-1.93
Structure conservation index	0.81
SVM decision value	0.30
SVM RNA-class probability	0.679317
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7194113 92 - 22407834
-------AAACGCACUUCGUGGGUGAAAAAAA--AUAGACAGUCGCACUGCCCGCGGCGGCAGCGACGCCGGCUGCGCUGCCGCUGCGCCCCGAAGUCCUG
-------....(.((((((.((((........--.....(((.....)))...((((((((((((..(....)..)))))))))))))))))))))).).. ( -44.00)
>DroSec_CAF1 11816 92 - 1
-------AAACGCACUUCGUGGGUGAAAAAAA--AUUGACAGUCGCACUGCCCGCGGCGGCAGCGAUGCCGGCUGCGCUGCCGCUGCGCCUCGAAGUCCUG
-------....(.((((((.((((((......--........))))......(((((((((((((..(....)..))))))))))))))).)))))).).. ( -40.24)
>DroSim_CAF1 25338 92 - 1
-------AAACGCACUUCGUGGGUGAAAAAAA--AUAGACAGUCGCACCGCCCGCGGCGGCAGCGACGCCGGCUGCGCUGCUACUGCGCCUUGAAGUCCUG
-------....(.(((((((((((((......--........)))).)))).(((((..((((((..(....)..))))))..)))))....))))).).. ( -33.94)
>DroEre_CAF1 34246 91 - 1
-------AAACGCACUUCGUGGGUGAAA-AAA--AUAGACAGUCGCACUGCCCGCGGCGGCAGCGACGCCGGCUGCGCUGCCGCUGCGCCCCGAAGUCCUG
-------....(.((((((.((((....-...--.....(((.....)))...((((((((((((..(....)..)))))))))))))))))))))).).. ( -44.00)
>DroYak_CAF1 26711 92 - 1
-------AAACGCACUUCGUGGGUGAAAAAAA--AUAGACAGUCGCAAUGCCCGCGGCGGCAGCGACGCCGGCUGCGCUGCUGCUGCGCCCCGAAGUCCUG
-------....(.((((((.(((((.......--.......(((((.......)))))(((((((.(((.....))).))))))).))))))))))).).. ( -39.30)
>DroAna_CAF1 12484 100 - 1
UCGAUAGGCACGCAGUUUUUGGUAGAAAAAAAGAGCAGUCAACCUCUCUGCCCGCGACAGCAGAGACGCCUACUGCGCUGCCGCUGCU-CACGAAGUCCUG
....((((.(((((((....(((((.........(((((...(.(((((((........))))))).)...))))).)))))))))).-......)))))) ( -29.91)
>consensus
_______AAACGCACUUCGUGGGUGAAAAAAA__AUAGACAGUCGCACUGCCCGCGGCGGCAGCGACGCCGGCUGCGCUGCCGCUGCGCCCCGAAGUCCUG
...........(.((((((.((((...............(((.....)))...((((((((((((..(....)..)))))))))))))))))))))).).. (-31.39 = -32.37 +   0.98)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:32 2006