| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,191,601 – 7,191,700 |
| Length | 99 |
| Max. P | 0.534354 |
| Location | 7,191,601 – 7,191,700 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.40 |
| Mean single sequence MFE | -38.30 |
| Consensus MFE | -20.32 |
| Energy contribution | -20.22 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7191601 99 + 22407834 CUAUGCUAAUGGUGGAGCAUCCACCGAUCGAUGAGGUCUCACUUUUGGCAUCGUC------CAUCAGAGUGGCAUCAUCCA---CCAGGUCGUUGACCAGCACCUGCG--------- ...((((..(((((((....((((((((.(((((.(((........))).)))))------.))).).)))).....))))---)))((((...))))))))......--------- ( -36.40) >DroVir_CAF1 13307 108 + 1 CAAUGCUGAUUGUGGAACAGCCGCCAAUCGAUGAUGUCUCGCUCUUGGCAUCAUC------CAUUAGCGUAGCAUCAUCAA---CCAUAUCGUUGACCAGCAGCUGGGGUCCGCCGA ...........(((((.((((.((...((((((((((..((((..(((......)------))..))))..))))))))((---(......)))))...)).))))...)))))... ( -37.70) >DroPse_CAF1 34897 99 + 1 CUAUGCUGAUCGUGGAACAGCCCCCGAUCGAUGAGGUCUCGCUCUUGGCAUCGUC------CAUUAGGGUGGCAUCGUCGG---CCAGAUCGUUGACCAGCACUUGGG--------- ((((((((((((.((......)).))))).....((((.((.(((.(((..((.(------(((....))))...))...)---))))).))..))))))))..))).--------- ( -34.10) >DroWil_CAF1 20020 111 + 1 CAAUGCUGAUGGUGGAGCAGCCACCAAUGGAUGAGGUUUCACUUUUGGCAUCGUCGUUCAUCAUCAACGUGGCAUCGUCCAGGGCCAAGUCGUUGACCAGCACUUGGGCAG------ ((((((((.((((((.....))))))(((((((((((.(((....))).))).))))))))..((((((((((.((.....))))))...)))))).))))).))).....------ ( -37.60) >DroMoj_CAF1 13411 108 + 1 CAAUGCUGAUGGUCGAGCAGCCACCAAUCGAUGACGUCUCGCUCUUGGCAUCAUC------CAUUAGUGUGGCAUCGUCCA---CCAUGUCGUUGACCAGCAGCUGGGGACCGCCGA ..((((((((((..((...((((.....(((.(....))))....)))).))..)------)))))))))(((...((((.---(((.((.(((....))).))))))))).))).. ( -36.80) >DroAna_CAF1 9607 99 + 1 CUAUGCUGAUGGUGGAACAGCCACCGAUCGAUGACGUCUCGCUCUUGGCAUCGUC------CAUCAGUGUGGCGUCAUCGG---CCAGGUCAUUGGCCAGCACCUGAG--------- ...((((((((((((.....))))).)))(((((((((.((((..(((......)------))..)))).)))))))))((---((((....))))))))))......--------- ( -47.20) >consensus CAAUGCUGAUGGUGGAACAGCCACCAAUCGAUGAGGUCUCGCUCUUGGCAUCGUC______CAUCAGCGUGGCAUCAUCCA___CCAGGUCGUUGACCAGCACCUGGG_________ ...(((((.((((((.....))))))...(((((.(((........))).)))))........(((((((((............)))...)))))).)))))............... (-20.32 = -20.22 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:30 2006