Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,188,678 – 7,188,777 |
Length | 99 |
Max. P | 0.996552 |
Location | 7,188,678 – 7,188,777 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.05 |
Mean single sequence MFE | -27.08 |
Consensus MFE | -20.22 |
Energy contribution | -20.46 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.18 |
Mean z-score | -2.35 |
Structure conservation index | 0.75 |
SVM decision value | 2.71 |
SVM RNA-class probability | 0.996552 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7188678 99 - 22407834 ACCUCCCCCUUGAUAUCACUCUCCAGCUCUCUUUUCGCCUCUCUGCACGGGCGUAAGCAUUUGCGUCGAAGGGG-GUUAUUUG------------CCCCAACCACAAUAAAU-------- ....((((((((((.....................(((((........)))))...((....))))).))))))-).......------------.................-------- ( -22.80) >DroSec_CAF1 6387 100 - 1 ACCUCCCCCUUCAUAUUACUCUCCAGCUCUCUUUUCGCCUCUGUGCACGGGCGUAAGUAUUUGCGUCGAAGGGGGAUUAUUUG------------CCCCAACCACAAUAAAC-------- ...(((((((((.............((.(.............).))...(((((((....)))))))))))))))).......------------.................-------- ( -26.12) >DroSim_CAF1 19869 100 - 1 ACCUCCCCCUUCAUAUUACUCUCCAGCUCUCUUUUCGCCACUCUGCACGGGCGUAAGUAUUUGCGUCGAAGGGGGGUUAUUUG------------CCCCAACGACAAUAUAA-------- ...(((((((((........................((......))...(((((((....)))))))))))))))).......------------.................-------- ( -25.20) >DroEre_CAF1 28641 98 - 1 ACCUCCCCCUCCAUUACACUCUCCUGCUCUCUCUUCGCCUCUCUGCACGGGCGUAAGCAGUUGUGUCGAGGGGGGUCC-----------CACCUCUCCCAAUUAUAAAC----------- ...((((((((....((((....(((((.......(((((........)))))..)))))..)))).))))))))...-----------....................----------- ( -30.10) >DroYak_CAF1 21120 120 - 1 ACCUCCCCCUCCAUAGCAGUCUCCAGCUCUCUUUUCGCCUCUCUGCAUGGGCGCAAGCAGUUGUGUCGAAGGGGGUCCAGUUGUCAACACCCCCCUCCCCACUACAAAAAAAAAGUAUAU ..........((((.((((......((.........))....))))))))((....)).((.(((..((.((((((............)))))).))..))).))............... ( -31.20) >consensus ACCUCCCCCUUCAUAUCACUCUCCAGCUCUCUUUUCGCCUCUCUGCACGGGCGUAAGCAUUUGCGUCGAAGGGGGGUUAUUUG____________CCCCAACCACAAUAAAA________ ....((((((((........................((......))...(((((((....)))))))))))))))............................................. (-20.22 = -20.46 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:29 2006