Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,183,487 – 7,183,596 |
Length | 109 |
Max. P | 0.796223 |
Location | 7,183,487 – 7,183,596 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.41 |
Mean single sequence MFE | -34.13 |
Consensus MFE | -21.79 |
Energy contribution | -22.57 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.15 |
Mean z-score | -2.20 |
Structure conservation index | 0.64 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7183487 109 - 22407834 GAUCAUCCGCCACGGGCACCUGUAUGGUGGCAAAGUAGCGAAACACUUUGUCCGGCGUGGAGAACUGCCGUAUGCGGUUCUCAUACUCAAUUAUCUAAG-----GCAAACAACG------ ........(((.(((.((((.....))))(((((((........))))))))))(.((((((((((((.....))))))))).))).)..........)-----))........------ ( -36.50) >DroVir_CAF1 4507 105 - 1 GAUCAUCGGCGACCGGCACUUGGAUGGUGGCAAAGUAGCGAAAUACUUUGUCUGGCGUCGAGAAUUGCCUGAUGCGAUUCUCAUACUCAAUGAUCUAAG------CAAUAA--------- ((((((.((((.((((((((.....))))((((((((......))))))))))))))))(((((((((.....))))))))).......))))))....------......--------- ( -39.30) >DroGri_CAF1 1265 105 - 1 GAUCGUCGGCCACCGGCACUUGGAUGGUGGCAAAGUAGCGAAAUACUUUAUCUGGCGUCGAGAAUUGCCUUAUGCGAUUCUCAUACUCAAUGAUCUAAG------CAAUAA--------- (((((((((((((((.(.....).)))))))((((((......))))))...))))...(((((((((.....))))))))).........))))....------......--------- ( -35.30) >DroWil_CAF1 1895 119 - 1 GAUCAUCGGCCACGGGGACUUGAAUGGUCGCAAAAUAUCGAAAUACUUUGUCCGGUGUGGAGAACUGACGUAUACGAUUCUCAUACUCAAUUAUCUAAUUGUAAGUGAAUAAUUCAUUU- ..((((..(((((.((((((.....))))(((((.(((....))).))))))).)))((((.((.(((.((((.........))))))).)).))))...))..))))...........- ( -20.60) >DroMoj_CAF1 5143 105 - 1 GAUCAUCGGCGACCGGCACUUGGAUGGUGGCAAAGUAGCGAAAUACUUUGUCUGGCGUCGAGAAUUGCCUGAUGCGAUUCUCAUACUCAAUAAUCUAAG------CAAUAA--------- .......((((.((((((((.....))))((((((((......))))))))))))))))(((((((((.....))))))))).................------......--------- ( -33.70) >DroAna_CAF1 1201 110 - 1 GAUCAUCGGCCACUGGCACUUGGAUGGUGGCAAAGUAACGAAAAACUUUGUCCGGCGUAGAAAACUGCCGGAUACGGUUCUCAUACUCGAUGAUCUAAG-----GCAAAGGACA-----A ((((((((((((((..(.....)..))))))..((((..((..((((.(((((((((........))))))))).)))).)).))))))))))))....-----..........-----. ( -39.40) >consensus GAUCAUCGGCCACCGGCACUUGGAUGGUGGCAAAGUAGCGAAAUACUUUGUCCGGCGUCGAGAACUGCCGGAUGCGAUUCUCAUACUCAAUGAUCUAAG______CAAAAA_________ (((.....(((.....((((.....))))((((((((......))))))))..)))...(((((((((.....)))))))))..........)))......................... (-21.79 = -22.57 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:28 2006