Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,173,521 – 7,173,613 |
Length | 92 |
Max. P | 0.868268 |
Location | 7,173,521 – 7,173,613 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.51 |
Mean single sequence MFE | -22.35 |
Consensus MFE | -13.84 |
Energy contribution | -15.40 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.09 |
Mean z-score | -1.88 |
Structure conservation index | 0.62 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868268 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7173521 92 - 22407834 AUUGCUGCUAAUUUUCAGCAUUUCCUAAAAGGCAAAAA----------------------------GCAAAUCUCGGCUGCAGUGGCAACAAUUGGCCAAUUGCAAUCUUCAUUAGGCUU ..(((((........)))))...(((((...((.....----------------------------)).......(..(((((((((........))).))))))..)....)))))... ( -22.70) >DroSec_CAF1 115012 92 - 1 AUUGCUGCUAAUUUUCAGCAUUGCCUAAAAGGCAAAAA----------------------------GCAAAUCUCGGCUGCAGUGGCAACAAUUGGCCAAUUGCAAUCUUCAUUAGGCUU ..(((((........)))))..((((((...((.....----------------------------)).......(..(((((((((........))).))))))..)....)))))).. ( -26.80) >DroAna_CAF1 121011 120 - 1 AUUGCUGCUAAUUUUUUUCAUUGCCUAAAAGCUAAAAACAAAAAAAAAAAUGGGGAAAUAAGAAAUACAAAUCUCAGCUGAAAAGGCAACAAUUGGCCAAUUGCAAUCUUCAUUAGGCUU (((((.(((((((.......((((((...((((.....((..........))((((...............))))))))....)))))).))))))).....)))))............. ( -17.56) >consensus AUUGCUGCUAAUUUUCAGCAUUGCCUAAAAGGCAAAAA____________________________GCAAAUCUCGGCUGCAGUGGCAACAAUUGGCCAAUUGCAAUCUUCAUUAGGCUU ..(((((........)))))..((((((......................................((........))(((((((((........))).)))))).......)))))).. (-13.84 = -15.40 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:23 2006