Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,172,984 – 7,173,100 |
Length | 116 |
Max. P | 0.536296 |
Location | 7,172,984 – 7,173,100 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.20 |
Mean single sequence MFE | -40.80 |
Consensus MFE | -34.46 |
Energy contribution | -34.13 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.10 |
Mean z-score | -1.55 |
Structure conservation index | 0.84 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7172984 116 + 22407834 ---GCAACCAGAAUCGGCCAAAAGCACUUGGCCAUGUGUGCGGGCCCAGCUGCUCACUGUUCACUUAUUGUCAGUCGGU-UGGCUUACAGCGGCUGGAUGCCGCAGCUUAGUAUUUGCAU ---((((........((((((......)))))).....(((((..(((((((((....((..(((.((.....)).)))-..))....)))))))))...))))).........)))).. ( -41.30) >DroSec_CAF1 114475 115 + 1 ---GCACCCAGAAUUGGCCAAAAGCACUUGGCCAUGUGUGCGGGCCCAGCUGCUCACUGUUCACUUAUUGUCAGUCGGU-UGGCUUACAGCGGCUG-AUGCCGCAGCUUAGUAUUUGCAU ---((((.((....(((((((......))))))))).))))(((((((((((...((((..((.....)).))))))))-)))......(((((..-..))))).))))........... ( -41.20) >DroAna_CAF1 120385 112 + 1 UUGGAAGCCCGAAGUGGCCAAAAGCACUUGGCCAUGUGUGCCGAAGCAGCUGCUC-------GCUUAUUGUCAGUCGGUUUGGCUUACAACGGCUG-AUGCUGCAGCUUAGUAUUUGCAU ((((....)))).((((((((......))))))))..((((.((.((((((((..-------((.....((((((((...((.....)).))))))-)))).))))))..)).)).)))) ( -39.90) >consensus ___GCAACCAGAAUUGGCCAAAAGCACUUGGCCAUGUGUGCGGGCCCAGCUGCUCACUGUUCACUUAUUGUCAGUCGGU_UGGCUUACAGCGGCUG_AUGCCGCAGCUUAGUAUUUGCAU ...............((((((......))))))....(((((((..(((((((..............((((.((((.....)))).)))).(((.....)))))))))..)..))))))) (-34.46 = -34.13 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:22 2006