Locus 259

Sequence ID 2L_DroMel_CAF1
Location 736,575 – 736,667
Length 92
Max. P 0.666304
window416

overview

Window 6

Location 736,575 – 736,667
Length 92
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 84.35
Mean single sequence MFE -23.33
Consensus MFE -16.34
Energy contribution -16.52
Covariance contribution 0.19
Combinations/Pair 1.14
Mean z-score -1.69
Structure conservation index 0.70
SVM decision value 0.28
SVM RNA-class probability 0.666304
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 736575 92 - 22407834
UGAGCCAAAUCGGGAUUAUAUAAUUAUAUGGAUACAUUCAAAAGUGCAUGUGCAUAUGAAUGAGUGAAUAAAUUAC---------UCCGA---ACUGAGGGCCC
...(((...((((...((((....))))((((..((((((...((((....)))).)))))).((((.....))))---------)))).---.)))).))).. ( -22.20)
>DroSim_CAF1 1024 92 - 1
UGAGCCAAAUCGGGCUUAUAUAAUUAUAUGGAUACAUUCAAAAGUGCAUGUGCAUAUGAAUGAGUGAAUAAAUUAC---------UCCGU---ACUGAGGGCCC
((((((......))))))........((((((..((((((...((((....)))).)))))).((((.....))))---------)))))---).......... ( -22.70)
>DroYak_CAF1 890 92 - 1
UGAGCCAAAUCGGGCUUAUAUAAUUAUAUGGAUACAUUCAAAAGUGCAUGUGCAUAUGAAUGAGUGAAUAAAUUAC---------UCUGU---ACUGAGGGCCC
...(((...((((..........(((((((.((((((......)))..))).)))))))..((((((.....))))---------))...---.)))).))).. ( -21.80)
>DroAna_CAF1 1663 103 - 1
CGAGCCAAAUCGGGUACAUAUAAUUAUAUGGAUACGGUCAUAGGUGCAUGUGCAUAUGAAUGAGCGAAUAAAUUAAGAGUGGGUCUCUGGGGCUCUGGGG-ACA
.(((((..........(((((....)))))....((.((((..((((....))))....)))).)).........((((.....))))..))))).(...-.). ( -26.60)
>consensus
UGAGCCAAAUCGGGCUUAUAUAAUUAUAUGGAUACAUUCAAAAGUGCAUGUGCAUAUGAAUGAGUGAAUAAAUUAC_________UCCGU___ACUGAGGGCCC
...(((...((((...(((((....)))))....((((((...((((....)))).))))))................................)))).))).. (-16.34 = -16.52 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:26 2006