Locus 2589

Sequence ID 2L_DroMel_CAF1
Location 7,170,092 – 7,170,202
Length 110
Max. P 0.601853
window4127

overview

Window 7

Location 7,170,092 – 7,170,202
Length 110
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 74.56
Mean single sequence MFE -28.25
Consensus MFE -12.65
Energy contribution -16.65
Covariance contribution 4.00
Combinations/Pair 1.10
Mean z-score -2.25
Structure conservation index 0.45
SVM decision value 0.14
SVM RNA-class probability 0.601853
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7170092 110 + 22407834
AAUACAUAUAGCUAAAGCUAU-----GCUUUUGGUACGCAGCAUAGGCAAAAGUCAGUGCAACAUGUUGCCGCA--ACCAUGAAAUGUAAAUAAAUUUCUCAUGCGGCCUGGCAUG---U
......((((((....)))))-----).............((((.(((....))).)))).(((((((((((((--.....(((((........)))))...))))))..))))))---) ( -32.30)
>DroSec_CAF1 111305 115 + 1
AAUACAUAUAGCCAAAGCUAUAUGUAGCUUUUGGUACGCAGCAUAGGCAGAAGUCAGUGCAACAUGUUGCCGCA--ACCAUGAAAUGUAAAUAAAUUUCUCAUGCGGCCUAGCAUG---U
..((((((((((....))))))))))((.........)).((((.(((....))).)))).(((((((((((((--.....(((((........)))))...))))))..))))))---) ( -39.30)
>DroWil_CAF1 188039 101 + 1
UAUGUAUAUAA-UAUAUGUAUGU----------AUCCU---CAUAGUCA-----CACUGCAACAUGUUGCCCCAGGACCAUGAAAUGUAAAUAAAUUUCUCAUGCGGCCUGCCAAGUCGU
((((((((((.-..)))))))))----------)...(---(((.(((.-----....((((....)))).....))).))))....................(((((.......))))) ( -17.90)
>DroAna_CAF1 117280 104 + 1
UAUAUAUAUAA-CAAGGCUAUAU----------AUUCUAAGCGUGUGCAGAAGUCAGUGCAACAUGUUGCCAGU--GCCAUGAAAUGUAAAUAAAUUUCUCAUGCGGCCUGCCAUG---U
..........(-((.(((.....----------......((((((((((........))).)))))))(((.((--(....(((((........))))).)))..)))..))).))---) ( -23.50)
>consensus
AAUACAUAUAA_CAAAGCUAUAU__________AUACGCAGCAUAGGCAGAAGUCAGUGCAACAUGUUGCCGCA__ACCAUGAAAUGUAAAUAAAUUUCUCAUGCGGCCUGCCAUG___U
.....(((((((....))))))).................((((.(((....))).))))..((((((((((((.......(((((........)))))...))))))..)))))).... (-12.65 = -16.65 +   4.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:21 2006