Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,169,071 – 7,169,161 |
Length | 90 |
Max. P | 0.724805 |
Location | 7,169,071 – 7,169,161 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 88.81 |
Mean single sequence MFE | -34.07 |
Consensus MFE | -26.59 |
Energy contribution | -27.70 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.35 |
Structure conservation index | 0.78 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724805 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7169071 90 + 22407834 ------CGG--AGCCGGAUUUCCGGAGACAAAAUCCGGAUACGGUGGCAGCACUUUGACAUUUUAAAGCCGCCGCCAGACGGCGUGACUCUUAUCGCA ------...--.((((....((((((.......))))))...((((((.((..(((((....))))))).))))))...))))((((......)))). ( -34.80) >DroSec_CAF1 110368 90 + 1 ------CGG--AGCCAGAUUUCCGGAGACAAAAUCCGGAUACGGUGGCAGCACUUUGACAUUUUAAAGCCGCCGCCAGACGGCGUGGCUCUUAUCGCA ------.((--(((((....((((((.......))))))...((((((...................))))))(((....))).)))))))....... ( -34.91) >DroAna_CAF1 116441 96 + 1 UACGUCCGGAUAGACGGA--UCCGGAGACAAAAUCCGGAUACGGUCACAGCACUUUGACAUUUUAAAGCCGCCGCCAGACGGCGUGGUUCUUAUCGCA ..((((.((...(((.((--((((((.......))))))).).)))...((.((((((....))))))..))..)).))))..(((((....))))). ( -32.50) >consensus ______CGG__AGCCGGAUUUCCGGAGACAAAAUCCGGAUACGGUGGCAGCACUUUGACAUUUUAAAGCCGCCGCCAGACGGCGUGGCUCUUAUCGCA ............((((....((((((.......))))))...((((((.((..(((((....))))))).))))))...))))((((......)))). (-26.59 = -27.70 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:18 2006