Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,165,632 – 7,165,732 |
Length | 100 |
Max. P | 0.700509 |
Location | 7,165,632 – 7,165,732 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.56 |
Mean single sequence MFE | -24.82 |
Consensus MFE | -14.90 |
Energy contribution | -14.86 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.19 |
Mean z-score | -1.91 |
Structure conservation index | 0.60 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7165632 100 - 22407834 -----------------CAUUGGAAAAUGAUGUGCGACAGUUCGCACAACUCGUAAGAUGCAACUGGCAGAUAGAAAGAAAAGUUU-CAACUUGGAACUAUUCUGUGGCCUCAC--AAAA -----------------((((....)))).(((((((....)))))))..((....)).......(((..((((((.....(((((-(.....)))))).)))))).)))....--.... ( -26.40) >DroSec_CAF1 107008 100 - 1 -----------------UAAUGGGAAAUGAUGUGCGACAGUUCGCACAACUCGUAAGAUGCAACUGGCAGAUAGAAAGAAAAGUUU-CAACUUGGAACUAUUCUGUGGCCCAAC--AAAA -----------------...((((..((.((.(((..(((((.(((....((....))))))))))))).))....((((.(((((-(.....)))))).))))))..))))..--.... ( -27.50) >DroSim_CAF1 110095 100 - 1 -----------------UAAUGGGAAAUGAUGUGCGACAGUUCGCACAACUCGUAAGAUGGAACUGGCAGAUAGAAAGAAAAGUUU-CAACUUGCAACUAUUCUGUGGCCCCAC--AAAA -----------------.(((((.......(((((((....)))))))....(((((.(((((((................)))))-)).)))))..))))).((((....)))--)... ( -27.89) >DroYak_CAF1 115073 100 - 1 -----------------UAAUGGGAAAUGAUGUGCGACAGUUCGCACAACUCGUAAGAUGCAACUGGCAGAUAGAAAGCAAAGUUU-CAACUUGGAACUAUUCUGUAGCUCCAA--AAAA -----------------...(((...(((((((((((....)))))))..))))...........(((..((((((.....(((((-(.....)))))).)))))).)))))).--.... ( -23.40) >DroAna_CAF1 113113 119 - 1 UUAAAAAGCGGUUCUUUCCAUGAACAAUUCUUUGCGACACUUUGCACAACAUUAAAGAUGCAACUGACAGAUAGAAAGCAAAGUUUUCGUCUUGAAA-CAUUUUGUGGCCAAACUAAAAA .........((((....(((..((...(((...((((.(((((((....((((...))))...(((.....)))...)))))))..))))...))).-...))..)))...))))..... ( -18.90) >consensus _________________UAAUGGGAAAUGAUGUGCGACAGUUCGCACAACUCGUAAGAUGCAACUGGCAGAUAGAAAGAAAAGUUU_CAACUUGGAACUAUUCUGUGGCCCCAC__AAAA ..............................(((((((....))))))).................(((..((((((....(((((...))))).......)))))).))).......... (-14.90 = -14.86 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:13 2006