Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,165,476 – 7,165,592 |
Length | 116 |
Max. P | 0.893980 |
Location | 7,165,476 – 7,165,592 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.98 |
Mean single sequence MFE | -33.24 |
Consensus MFE | -26.35 |
Energy contribution | -26.54 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.16 |
Mean z-score | -1.91 |
Structure conservation index | 0.79 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7165476 116 - 22407834 UACCUUAGAUAAGCAAACAAGUGGAAGUGCCGGGCGAUGAGAAAGCGAAUUGUAUCUGUGAGAUGCGCUUCAG----GUGCAUCUUUUGGAUACUUGUAGAUUGUUUGCUUGCCAACCGC .......(.(((((((((((.((.((((((((((((((..(....)..)))))......(((((((((.....----))))))))))))).))))).))..))))))))))).)...... ( -37.30) >DroSec_CAF1 106852 116 - 1 UACCUUAGAUAAGCAAACAAGUGGAAGUGCCGGGCGAUCAGAAAGCGAAUUGUAUCUGUGAGAUGCGCUUCAG----GUGCAUCUUUUGGAUACUUGUAGAUUGUUUGUUUGCCAACCGC ............((((((((.(((.....))).((((((.....((((...(((((((.(((((((((.....----))))))))).))))))))))).))))))))))))))....... ( -35.40) >DroSim_CAF1 109939 116 - 1 UACCUUAGAUAAGCAAACAAGUGGAAGUGCCGGGCGAUGAGAAAGCGAAUUGUAUGUGUGAGAUGCGCUUCAG----GUGCAUCUUUUGGAUACUUGUAGAUUGUUUGUUUGCCAACCGC .......(.(((((((((((.((.((((((((((((((..(....)..)))))......(((((((((.....----))))))))))))).))))).))..))))))))))).)...... ( -34.90) >DroYak_CAF1 114943 92 - 1 UACCUUAGAUAAGCAAACAA------------------------CCGAAUUGUAUCUGUGAGAUGUGCUUCAG----GUGCAUCUCUUGGAUACUUGUAGAAUGUUUGUUUGCCAACCGC .......(.((((((((((.------------------------.(.....(((((((.((((((..(.....----)..)))))).))))))).....)..)))))))))).)...... ( -30.40) >DroAna_CAF1 112962 111 - 1 UAUCUUGGAUAAGCAAACAAGUGGAUGUGCCGG---------AAUCGAAUUGUAUCUUUGGGAUGCGUUUCUGUCUAUUGCAUCUUUGGGAUACCUGUAGCUUGUUUAUUUUGCAGCUGC ..(((.((....(((..(....)..))).))))---------)........(((((((..(((((((...........)))))))..)))))))..((((((.((.......)))))))) ( -28.20) >consensus UACCUUAGAUAAGCAAACAAGUGGAAGUGCCGGGCGAU_AGAAAGCGAAUUGUAUCUGUGAGAUGCGCUUCAG____GUGCAUCUUUUGGAUACUUGUAGAUUGUUUGUUUGCCAACCGC .......(.(((((((((((.(((.....)))...................(((((((.(((((((((.........))))))))).))))))).......))))))))))).)...... (-26.35 = -26.54 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:12 2006