Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,164,236 – 7,164,337 |
Length | 101 |
Max. P | 0.882781 |
Location | 7,164,236 – 7,164,337 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.48 |
Mean single sequence MFE | -30.86 |
Consensus MFE | -15.92 |
Energy contribution | -17.56 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.05 |
Mean z-score | -2.08 |
Structure conservation index | 0.52 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7164236 101 + 22407834 AAUCAAAUUCAUUUGCCAACUGUUUUCACU--GCAAGCCAAAUGUGUC--UUUGGCUGACU-UUGGCA-ACCAGCGCUCA--------GAAGCC-----AUGGCAAAUGGAGCAGUCAGG .......(((((((((((..((.((((...--((.(((((((......--)))))))....-...((.-....))))...--------)))).)-----))))))))))))......... ( -29.00) >DroSec_CAF1 105616 98 + 1 AAUCAAAUUCAUUUGCCAACUGUUUUCACU--GCAAGCCAAAUGCGGC--UUUGGCUGACU----GCA-ACCAGCGCUCA--------GAAGCC-----AUGGCAAAUGGAGCAGUCAGG .......(((((((((((..((.((((...--(((((((......)))--))..((((...----...-..))))))...--------)))).)-----))))))))))))......... ( -30.80) >DroSim_CAF1 108721 98 + 1 AAUCAAAUUCAUUUGCCAACUGUUUUCACU--GCAAGCCAAAUGUGGC--UUUGGCUGACU----GCA-ACCAGCGCUCA--------GAAGCC-----AUGGCAAAUGGAGCAGUCAGG .......(((((((((((..((.((((...--((((((((....))))--))..((((...----...-..))))))...--------)))).)-----))))))))))))......... ( -31.50) >DroYak_CAF1 113674 107 + 1 AAUCAAAUUCAUUUGCAAACUGUUUUCACU--UCAAGCCAAAUCUGUC--U---GCUGUCUGCUGGUU-GCCAGCGCUCAGAAGCUCAGAAGCC-----UUGGCAAAUGGAGCAGUCAGG .......(((((((((....((....))..--.((((.(...((((.(--(---.(((..((((((..-.))))))..))).))..)))).).)-----))))))))))))......... ( -28.10) >DroAna_CAF1 110780 103 + 1 AAUCAAAUUCAUUUGCCAACAGUUUUCACUCGGCAAGCGAA-UCUGCCGGAUUGCCAGAUU----GCUUGGCAG----UA--------GAAGCUACCAAAUGGCAAAUGGAGCAACCAGG .......(((((((((((..(((((..(((.(.(((((.((-((((.(.....).))))))----))))).)))----).--------.)))))......)))))))))))......... ( -34.90) >consensus AAUCAAAUUCAUUUGCCAACUGUUUUCACU__GCAAGCCAAAUGUGGC__UUUGGCUGACU____GCA_ACCAGCGCUCA________GAAGCC_____AUGGCAAAUGGAGCAGUCAGG .......(((((((((((.................(((((((........)))))))........((......)).........................)))))))))))......... (-15.92 = -17.56 + 1.64)
Location | 7,164,236 – 7,164,337 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.48 |
Mean single sequence MFE | -33.04 |
Consensus MFE | -16.13 |
Energy contribution | -16.77 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.05 |
Mean z-score | -2.30 |
Structure conservation index | 0.49 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7164236 101 - 22407834 CCUGACUGCUCCAUUUGCCAU-----GGCUUC--------UGAGCGCUGGU-UGCCAA-AGUCAGCCAAA--GACACAUUUGGCUUGC--AGUGAAAACAGUUGGCAAAUGAAUUUGAUU ...........((((((((((-----(((..(--------(.......)).-.)))).-.((.(((((((--......))))))).))--.((....))...)))))))))......... ( -30.80) >DroSec_CAF1 105616 98 - 1 CCUGACUGCUCCAUUUGCCAU-----GGCUUC--------UGAGCGCUGGU-UGC----AGUCAGCCAAA--GCCGCAUUUGGCUUGC--AGUGAAAACAGUUGGCAAAUGAAUUUGAUU ...........(((((((((.-----.(((..--------..)))((((.(-..(----.((.(((((((--......))))))).))--.)..)...)))))))))))))......... ( -32.50) >DroSim_CAF1 108721 98 - 1 CCUGACUGCUCCAUUUGCCAU-----GGCUUC--------UGAGCGCUGGU-UGC----AGUCAGCCAAA--GCCACAUUUGGCUUGC--AGUGAAAACAGUUGGCAAAUGAAUUUGAUU ...........(((((((((.-----.(((..--------..)))((((.(-..(----.((.(((((((--......))))))).))--.)..)...)))))))))))))......... ( -32.50) >DroYak_CAF1 113674 107 - 1 CCUGACUGCUCCAUUUGCCAA-----GGCUUCUGAGCUUCUGAGCGCUGGC-AACCAGCAGACAGC---A--GACAGAUUUGGCUUGA--AGUGAAAACAGUUUGCAAAUGAAUUUGAUU ...........((((((((((-----(.(.((((..((.(((...(((((.-..)))))...))).---)--).))))...).)))).--.((....)).....)))))))......... ( -29.50) >DroAna_CAF1 110780 103 - 1 CCUGGUUGCUCCAUUUGCCAUUUGGUAGCUUC--------UA----CUGCCAAGC----AAUCUGGCAAUCCGGCAGA-UUCGCUUGCCGAGUGAAAACUGUUGGCAAAUGAAUUUGAUU ((.(((((((....((((...(((((((....--------..----)))))))))----))...))))))).))((((-((((.(((((((((....)))..)))))).))))))))... ( -39.90) >consensus CCUGACUGCUCCAUUUGCCAU_____GGCUUC________UGAGCGCUGGU_UGC____AGUCAGCCAAA__GACACAUUUGGCUUGC__AGUGAAAACAGUUGGCAAAUGAAUUUGAUU ...........(((((((((......((((...............((((.............))))...............))))......((....))...)))))))))......... (-16.13 = -16.77 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:11 2006