Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,163,323 – 7,163,425 |
Length | 102 |
Max. P | 0.985687 |
Location | 7,163,323 – 7,163,425 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.48 |
Mean single sequence MFE | -36.55 |
Consensus MFE | -29.59 |
Energy contribution | -30.87 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.04 |
Mean z-score | -2.52 |
Structure conservation index | 0.81 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985687 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7163323 102 - 22407834 ------UGCUCGCCUCGCAGAAAUUUAUGGCGUUUGCAUGUCUGAAUUUAUCUGCUUGUUUCACAUGCAAAUGCAGUCAAAGUGCGGGGUGGGCGGUG------------AAAAAAAGGG ------.((((((((((((..........((((((((((((..(((.............)))))))))))))))........))))))))))))....------------.......... ( -38.99) >DroSec_CAF1 104736 101 - 1 ------UACUCGCCUCGCAGAAAUUUAUGGCGUUUGCAUGUCUGAAUUUAUCUGCUUGUUUCACAUGCAAAUGCAGUCAAAGGGCGGGGUGGGCGGUG------------AAA-AAAGGG ------..((((((((((...........((((((((((((..(((.............))))))))))))))).........)))))))))).....------------...-...... ( -34.37) >DroSim_CAF1 107834 101 - 1 ------UGCUCGCCUCGCAGAAAUUUAUGGCGUUUGCAUGUCUGAAUUUAUCUGCUUGUUUCACAUGCAAAUGCAGUCAAAGGGCGGGGUGGGCGGUG------------AAA-AAAGGG ------.(((((((((((...........((((((((((((..(((.............))))))))))))))).........)))))))))))....------------...-...... ( -38.57) >DroYak_CAF1 112746 98 - 1 ------UGCUCGGCUCACAAAAAUUUAUGGCGUUUGCAUGUCUGAAUUUAUCUGCUUGUUUCACAUGCAAAUGCAGUCAAAGGGCGGGGUGGGCGCUG------------GAA-A---GG ------.(((((.(((.............((((((((((((..(((.............))))))))))))))).(((....)))))).))))).((.------------...-)---). ( -31.72) >DroAna_CAF1 109478 120 - 1 UCCUCUUGGUUGCCUCGCAAAAAUUUAUGGCGUUUGCAUGUCUGAAUUUAUCUGCUUGUUUCACAUGCAAAUGCAGUCAAAGGGGCGUGUAGGAGGAGGGUCUGGGUCUGGUCAGGAGGG ((((((((..((((((.((........))((((((((((((..(((.............))))))))))))))).......))))))..))))))))...(((((......))))).... ( -39.12) >consensus ______UGCUCGCCUCGCAGAAAUUUAUGGCGUUUGCAUGUCUGAAUUUAUCUGCUUGUUUCACAUGCAAAUGCAGUCAAAGGGCGGGGUGGGCGGUG____________AAA_AAAGGG ......((((((((((((...........((((((((((((..(((.............))))))))))))))).........))))))))))))......................... (-29.59 = -30.87 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:09 2006