Locus 2580

Sequence ID 2L_DroMel_CAF1
Location 7,162,982 – 7,163,094
Length 112
Max. P 0.969187
window4113

overview

Window 3

Location 7,162,982 – 7,163,094
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.53
Mean single sequence MFE -28.36
Consensus MFE -22.58
Energy contribution -22.66
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -2.25
Structure conservation index 0.80
SVM decision value 1.64
SVM RNA-class probability 0.969187
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7162982 112 + 22407834
UGGAGGCAACCUCAGUACUGA--------CACGGUUUCGUUUAACCAGGCCAAAACAGAAAAUCUGUUAAAGGUAGCAGCGCCAAAACCAAACGAAACCAAGCCGAAACUGAAACUGAAG
....(((....(((....)))--------...((((((((((.....(((...(((((.....)))))....((....)))))......))))))))))..)))................ ( -27.00)
>DroSec_CAF1 104400 112 + 1
UGGAGGCCACCUCAGUACUGA--------CACGGUUUCGUUUAACCAGGCCAAAACAGAAAAUCUGUUAAAGGUAGCAGCGGCAAAACCAAACGAAACCCAGCCGAAACUGAAACUGAAA
.((......))(((((.....--------...((((((((((......(((..(((((.....)))))....((....)))))......))))))))))(((......)))..))))).. ( -29.00)
>DroSim_CAF1 107498 112 + 1
UGGAGGCCACCUCAGUACUGA--------CACGGUUUCGUUUAACCAGGCCAAAACAGAAAAUCUGUUAAAGGUAGCAGCGGCAAAACCAAACGAGACCCAGCCGAAACUGAAACUGAAA
.((......))(((((.....--------...((((((((((......(((..(((((.....)))))....((....)))))......))))))))))(((......)))..))))).. ( -29.10)
>DroYak_CAF1 112411 110 + 1
UGGAGGCCACCUCAGUACUGA--------CACGGUUUCGUUUAACCAGGCCAAAACAGAAAAUCUGUUAAAGGUAGCAGC--CAAAACCAAACGAAACCAAGCCGAAACUGAAACUGAAA
....(((....(((....)))--------...((((((((((...........(((((.....)))))...(((....))--)......))))))))))..)))................ ( -26.10)
>DroAna_CAF1 109141 118 + 1
UGGGGGCCAGCUCAGUACUGAAAACCUGGCAUGGUUUCGU-UAACCAGGCCAGAACGGAAAAUCUGUUAAAGGUAACGGCC-AAAAACCAAACCAAACCAAGCCGAAACAGAAACUGAAA
(((.((((...(((....)))..(((((((.(((((....-.))))).)))..(((((.....)))))..))))...))))-.....)))..................(((...)))... ( -30.60)
>consensus
UGGAGGCCACCUCAGUACUGA________CACGGUUUCGUUUAACCAGGCCAAAACAGAAAAUCUGUUAAAGGUAGCAGCG_CAAAACCAAACGAAACCAAGCCGAAACUGAAACUGAAA
....(((....(((....)))...........((((((((((...........(((((.....)))))...(((............)))))))))))))..)))................ (-22.58 = -22.66 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:08 2006