Locus 258

Sequence ID 2L_DroMel_CAF1
Location 734,972 – 735,083
Length 111
Max. P 0.983401
window415

overview

Window 5

Location 734,972 – 735,083
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.80
Mean single sequence MFE -26.32
Consensus MFE -23.16
Energy contribution -22.84
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -1.81
Structure conservation index 0.88
SVM decision value 1.94
SVM RNA-class probability 0.983401
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 734972 111 - 22407834
AAGAAUAAUGGCCAAGGCACAUGUGUGCCAGAA-CACAACUUAGCUCACGAUAUAUUGACA-CUUGGCACAUAUGGC-------AUGCAGAAUAUACGAUAUCUAUGAAAAAUGCAUUAU
....((((((((....((.((((((((((((..-..(((..((........))..)))...-.))))))))))))))-------..))(((..........)))..........)))))) ( -24.90)
>DroSec_CAF1 6443 113 - 1
AGGAAUAAUGGCCAAUGCACAUGUGUGCCAGAACCACAAAUUGGCUCACGAUAUAUUGACAACUUGGCGCAUAUGGC-------AUGCAGAAUAUACGAUAUCUAUGAAAAAUGCAUUAU
....((((((((..((((.(((((((((((((.(((.....))).)).(((....)))......)))))))))))))-------))))(((..........)))..........)))))) ( -28.40)
>DroSim_CAF1 6477 111 - 1
AAGAAUAAUGGCCAAGGCACAUGUGUGCCAGAA-CACAACUUGGCUCACGAUAUAUUGACA-CUUGGCACAUAUGGC-------AUGCAGAAUAUACGAUAUCUAUGAAAAAUGCAUUAU
.......(((((((((.((..((((.(((((..-......))))).))))......))...-)))))).)))...((-------((.((..((((...))))...))....))))..... ( -24.50)
>DroEre_CAF1 6704 111 - 1
AAGAAUAAUGGCCACGGCACAUGUGUGCCAGAA-CACAACUUGGCUCACGAUAUAUUGACA-CUUGGCACAUAUGGC-------AUGCAGAAUAUACAAUAUCUAUGAAAAAUGCAUUAU
....((((((((....((.((((((((((((..-..(((..((........))..)))...-.))))))))))))))-------..))(((..........)))..........)))))) ( -24.40)
>DroYak_CAF1 6889 118 - 1
AAGAAUAAUGGCCAAGGCACAUGUGUGCCAGAA-CACAACUUGGCUCACGAUAUAUUGACA-CUUGGCACAUAUGGCACGCCGCAUGCAGAAUGUACCAUAUCUAUGAAAAAUGCAUUAU
....((((((((....((.((((((((((((..-..(((..((........))..)))...-.))))))))))))))..)))((((.((..((((...))))...))....))))))))) ( -29.40)
>consensus
AAGAAUAAUGGCCAAGGCACAUGUGUGCCAGAA_CACAACUUGGCUCACGAUAUAUUGACA_CUUGGCACAUAUGGC_______AUGCAGAAUAUACGAUAUCUAUGAAAAAUGCAUUAU
....((((((((....)).((((((((((((.....(((..((........))..))).....)))))))))))).......................................)))))) (-23.16 = -22.84 +  -0.32) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:25 2006