Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 734,972 – 735,083 |
Length | 111 |
Max. P | 0.983401 |
Location | 734,972 – 735,083 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.80 |
Mean single sequence MFE | -26.32 |
Consensus MFE | -23.16 |
Energy contribution | -22.84 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -1.81 |
Structure conservation index | 0.88 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983401 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 734972 111 - 22407834 AAGAAUAAUGGCCAAGGCACAUGUGUGCCAGAA-CACAACUUAGCUCACGAUAUAUUGACA-CUUGGCACAUAUGGC-------AUGCAGAAUAUACGAUAUCUAUGAAAAAUGCAUUAU ....((((((((....((.((((((((((((..-..(((..((........))..)))...-.))))))))))))))-------..))(((..........)))..........)))))) ( -24.90) >DroSec_CAF1 6443 113 - 1 AGGAAUAAUGGCCAAUGCACAUGUGUGCCAGAACCACAAAUUGGCUCACGAUAUAUUGACAACUUGGCGCAUAUGGC-------AUGCAGAAUAUACGAUAUCUAUGAAAAAUGCAUUAU ....((((((((..((((.(((((((((((((.(((.....))).)).(((....)))......)))))))))))))-------))))(((..........)))..........)))))) ( -28.40) >DroSim_CAF1 6477 111 - 1 AAGAAUAAUGGCCAAGGCACAUGUGUGCCAGAA-CACAACUUGGCUCACGAUAUAUUGACA-CUUGGCACAUAUGGC-------AUGCAGAAUAUACGAUAUCUAUGAAAAAUGCAUUAU .......(((((((((.((..((((.(((((..-......))))).))))......))...-)))))).)))...((-------((.((..((((...))))...))....))))..... ( -24.50) >DroEre_CAF1 6704 111 - 1 AAGAAUAAUGGCCACGGCACAUGUGUGCCAGAA-CACAACUUGGCUCACGAUAUAUUGACA-CUUGGCACAUAUGGC-------AUGCAGAAUAUACAAUAUCUAUGAAAAAUGCAUUAU ....((((((((....((.((((((((((((..-..(((..((........))..)))...-.))))))))))))))-------..))(((..........)))..........)))))) ( -24.40) >DroYak_CAF1 6889 118 - 1 AAGAAUAAUGGCCAAGGCACAUGUGUGCCAGAA-CACAACUUGGCUCACGAUAUAUUGACA-CUUGGCACAUAUGGCACGCCGCAUGCAGAAUGUACCAUAUCUAUGAAAAAUGCAUUAU ....((((((((....((.((((((((((((..-..(((..((........))..)))...-.))))))))))))))..)))((((.((..((((...))))...))....))))))))) ( -29.40) >consensus AAGAAUAAUGGCCAAGGCACAUGUGUGCCAGAA_CACAACUUGGCUCACGAUAUAUUGACA_CUUGGCACAUAUGGC_______AUGCAGAAUAUACGAUAUCUAUGAAAAAUGCAUUAU ....((((((((....)).((((((((((((.....(((..((........))..))).....)))))))))))).......................................)))))) (-23.16 = -22.84 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:25 2006