Locus 2579

Sequence ID 2L_DroMel_CAF1
Location 7,161,474 – 7,161,565
Length 91
Max. P 0.999666
window4112

overview

Window 2

Location 7,161,474 – 7,161,565
Length 91
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 90.61
Mean single sequence MFE -22.19
Consensus MFE -19.35
Energy contribution -19.59
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -2.87
Structure conservation index 0.87
SVM decision value 3.86
SVM RNA-class probability 0.999666
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7161474 91 + 22407834
CUUCCCUUCUUACCGUGUUCUAUAACUAUUCU-------UAUUUUUUCGCGUUACUUUCUGGGUUAUAGGCCCCUUUUGUUUGCCCAGAAAAGAAGGC
....(((((((..((((....((((......)-------))).....)))).....((((((((.(((((.....)))))..))))))))))))))). ( -23.90)
>DroSec_CAF1 102907 91 + 1
CUCCCCUUCUUGCCGUGUUCUAUUACUAUUCU-------UCUUUUUUCGCGUUACUUUCUGGGUUAUAGGCCCCUUUUGUUUGCCCAGAAAAGAAGGC
....(((((((..((((...............-------........)))).....((((((((.(((((.....)))))..))))))))))))))). ( -22.10)
>DroSim_CAF1 105999 91 + 1
CUCCCCUUCUUGCCGUGUUCUAUUACUAUUCU-------UCUUUUUUCGCGUUACUUUCUGGGUUAUAGGCCCCUUUUGUUUGCCCAGAAAAGAAGGC
....(((((((..((((...............-------........)))).....((((((((.(((((.....)))))..))))))))))))))). ( -22.10)
>DroEre_CAF1 107696 97 + 1
CUCCCCUUCUUACCGUGUUCUAUGAACAUUCUCUAUUUUU-UUGUUUUGCGCUACUUUCUGGGUUAUAGGCCCCUUUUGUUUGGCCAGAAAUGAAGGC
....(((((.....((((((...))))))...........-...(((((.(((((.....((((.....)))).....))..))))))))..))))). ( -20.30)
>DroYak_CAF1 110883 89 + 1
-UCCCCUUCUUACCGUGUUCUAUGACCAUUCU-------U-UUUUUUCGCGUUACUUUCUGGGUUAUAGGCCCCUUUUGUUUGCCCAGAAAAGAAGGC
-...(((((((..((((......((....)).-------.-......)))).....((((((((.(((((.....)))))..))))))))))))))). ( -22.54)
>consensus
CUCCCCUUCUUACCGUGUUCUAUGACUAUUCU_______U_UUUUUUCGCGUUACUUUCUGGGUUAUAGGCCCCUUUUGUUUGCCCAGAAAAGAAGGC
....(((((((..((((..............................)))).....((((((((.(((((.....)))))..))))))))))))))). (-19.35 = -19.59 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:07 2006