Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,151,397 – 7,151,491 |
Length | 94 |
Max. P | 0.548515 |
Location | 7,151,397 – 7,151,491 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 78.54 |
Mean single sequence MFE | -28.95 |
Consensus MFE | -9.53 |
Energy contribution | -10.40 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.26 |
Mean z-score | -2.68 |
Structure conservation index | 0.33 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548515 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7151397 94 + 22407834 UUGAAAUUUAUAUUAGAAGCUGCUAUAAAUUAUGGC-GAAAGCAG-AG------C-AAGACCCA---------AGACCCUUGCCG----GCUUAAAAGGCUGGCAAGAUCCGCCAA ....((((((((.(((...))).)))))))).((((-(...((..-.)------)-........---------.....(((((((----(((.....))))))))))...))))). ( -29.10) >DroSec_CAF1 92720 92 + 1 UUGAAAUUUAUAUUAGAAGCUGCUAUAAAUUAUGGU-GAGAGCAG-AG------C-AAG--CCA---------AGACCCUUGCUG----GCUUAAAAGGCUGGCAAGAGCCGCCAA ....((((((((.(((...))).)))))))).((((-..((((..-((------(-(((--...---------.....)))))).----))))....((((......)))))))). ( -25.50) >DroSim_CAF1 95414 93 + 1 UUGAAAUUUAUAUUAGAAGCUGCUAUAAAUUAUGGCGGAGAGCAG-GG------C-AAG--CCA---------AGACCCUUGCUG----GCUUAAAAGGCUGGCAAGAGCCGCCAA ....((((((((.(((...))).)))))))).((((((.......-((------.-...--)).---------.....(((((..----(((.....)))..)))))..)))))). ( -31.90) >DroEre_CAF1 97814 97 + 1 UGGAAAUUUAUAUUAGAAGCUGCUAUAAAUUAUGGC-GAAAGC-G-AGCGAGAGC-AAG--CCA---------AGACCCUUGCCG----GCUUAAAAGGCUGGCAAGACCCGCCAA ....((((((((.(((...))).)))))))).((((-(...((-.-.((....))-..)--)..---------.....(((((((----(((.....))))))))))...))))). ( -35.60) >DroYak_CAF1 100918 99 + 1 CUGAAAUUUAUAUUAGAAGCUGCUAUAAAUUAUGGC-GAAAGCAG-AGCGAGCCAAGAG--CCA---------AGACCUUUGCCG----GCUUAAAAGGCUGGCAAGAGCCACCAA ....((((((((.(((...))).))))))))...((-....)).(-.(((.((.....)--)).---------.....(((((((----(((.....)))))))))).)))..... ( -25.50) >DroPer_CAF1 113665 99 + 1 UCGAAAUUUAUAUUGGAAGCGGCUAUAAAUUAUGGG-GAGCACGGGCA------C-AAG--UCAAGAGCCCGGAGACCCCUCCAGAGGAGCUUAAAAAG-------AGUCUGCCAA ....(((((((((((....))).))))))))..(((-(....(((((.------(-...--....).)))))....))))......(((((((.....)-------)).)).)).. ( -26.10) >consensus UUGAAAUUUAUAUUAGAAGCUGCUAUAAAUUAUGGC_GAAAGCAG_AG______C_AAG__CCA_________AGACCCUUGCCG____GCUUAAAAGGCUGGCAAGAGCCGCCAA ..................(((((((((...))))))....)))...................................(((((((....(((.....))))))))))......... ( -9.53 = -10.40 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:06 2006