Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,142,851 – 7,142,951 |
Length | 100 |
Max. P | 0.521857 |
Location | 7,142,851 – 7,142,951 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 89.60 |
Mean single sequence MFE | -31.55 |
Consensus MFE | -23.75 |
Energy contribution | -24.75 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.04 |
Mean z-score | -1.47 |
Structure conservation index | 0.75 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7142851 100 + 22407834 GGCGACAAACAGCGGGCGCCGCUUUCUAUUUGUUUGCCUGCAAACACGCAGAGAAAAGCGAAUAGAAC---ACGGAGUGUGGAACGUAGUGGGGUGAAGC-CCA .((........))((((..((((((((((((((((..((((......))))....))))))))))))(---((...((.....))...))).))))..))-)). ( -35.40) >DroSec_CAF1 84300 97 + 1 GGCGACAAACAGCGGGCGCCGCUUUCUAUUUGUUUGCCUGCAAACACGCAGAGAAAAGCGAAUGGAAC---A----GAGUGAAACGGAGUGAGGUGAAGCCCCA (((..((.(((((((...)))))((((((((((((..((((......))))....)))))))))))).---.----............))....))..)))... ( -28.60) >DroSim_CAF1 87076 97 + 1 GGCGACAAACAGCGGGCGCCGCUUUCUAUUUGUUUGCCUGCAAACACGCAGAGAAAAGCGAAUGGAAC---A----GAGUGAAACGGAGUGGGGUGAAGCCCCA .((..(....(((((...)))))((((((((((((..((((......))))....)))))))))))).---.----.........)..))((((.....)))). ( -32.20) >DroYak_CAF1 91887 101 + 1 GGCGACAAACAGCGGGCGCCGCUUUCUAUUUGUUUGCCUGCAAACACGCAGAGAGAAGCGCACAGAACUAAACU--GAAUGGAACGGAACGGGGUGAAGC-CCA (((..((..(..(.(((((..((((((.(.((((((....)))))).).))))))..)))).(((.......))--).......).)....)..))..))-).. ( -30.00) >consensus GGCGACAAACAGCGGGCGCCGCUUUCUAUUUGUUUGCCUGCAAACACGCAGAGAAAAGCGAAUAGAAC___A____GAGUGAAACGGAGUGGGGUGAAGC_CCA ((((.(........).))))...((((((((((((.(((((......)))).)..)))))))))))).......................((((.....)))). (-23.75 = -24.75 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:05 2006