Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,142,368 – 7,142,464 |
Length | 96 |
Max. P | 0.569846 |
Location | 7,142,368 – 7,142,464 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 77.64 |
Mean single sequence MFE | -32.80 |
Consensus MFE | -15.65 |
Energy contribution | -16.38 |
Covariance contribution | 0.74 |
Combinations/Pair | 1.29 |
Mean z-score | -1.97 |
Structure conservation index | 0.48 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7142368 96 + 22407834 GGACCAAGGACUACGAGCACGCACUCUCGGGACACAGGAGUGCUGAGCUUAUAAGCCGCAGCAAACGGCUUACGCUCCAAAAUCCACGGCUAGAAA ((.((..(((....((((..((((((..(.....)..))))))........(((((((.......))))))).)))).....)))..))))..... ( -31.50) >DroSec_CAF1 83821 96 + 1 GGACCAAGGACUACGAGCACGCACUCUCGGGACACGGGAGUGCUGAGCUUAUAAGCCGCAGCAAACGGCUUACGCUCCAACAUCCACGGCUAGAAA ((.((..(((....((((..(((((((((.....)))))))))........(((((((.......))))))).)))).....)))..))))..... ( -36.40) >DroSim_CAF1 86591 96 + 1 GGACCAAGGACUGCGAGCACGCACUCUCGGGACACGGGAGUGCUGAGCUUAUAAGCCGCAGCAAACGGCUUACGCUCCAACAUCCACGGCUAGAAA ((.((..(((.((.((((..(((((((((.....)))))))))........(((((((.......))))))).))))))...)))..))))..... ( -37.50) >DroEre_CAF1 88813 96 + 1 GGGCCGAGGACUUUAAGCACGCACUCUGGGGACUCAGGAGUCCUGAGCUCAUAAGCCGCAGCAAACGGCUUACGUUUCAGCAUUCACGGCUAAAAA .(((((((..(((..((......))..)))..)))..((((.(((((..(.(((((((.......))))))).).))))).))))..))))..... ( -32.40) >DroYak_CAF1 91359 96 + 1 GGACCGAGCACUGUGAGCACGCACUUUAGGGACGCGGGAGUCCUGAGCUCAUAAGCCGCAGCAAACGGCUUACGUUUUAGCAUUCACGGCUAGAAA .....((((..((((....)))).....(((((......)))))..)))).(((((((.......)))))))..(((((((.......))))))). ( -30.60) >DroPer_CAF1 103898 79 + 1 GGGCUGAGGAC------CGUGUACGGCCAGGACA-------CAUGAGCUCAUAAGCUGCCACAAAGGGCUGUGGGUCGCAC----ACGCCCACAAA ((((((.((.(------((....)))))..(((.-------....((((....)))).(((((......))))))))...)----).))))..... ( -28.40) >consensus GGACCAAGGACUACGAGCACGCACUCUCGGGACACGGGAGUCCUGAGCUCAUAAGCCGCAGCAAACGGCUUACGCUCCAACAUCCACGGCUAGAAA ((.((..(..((..(((......)))..))..)...(((.....((((...(((((((.......))))))).)))).....)))..))))..... (-15.65 = -16.38 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:04 2006