Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,127,286 – 7,127,383 |
Length | 97 |
Max. P | 0.838648 |
Location | 7,127,286 – 7,127,383 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 93.45 |
Mean single sequence MFE | -14.64 |
Consensus MFE | -14.28 |
Energy contribution | -14.28 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.19 |
Structure conservation index | 0.98 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838648 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7127286 97 - 22407834 CUUUCUUUGCUUUCGUUGGCAACAAACAUACACAGACACACACAAAUUUGUUACGGUCCCCGCACCAAUUGAUUUGUGUUUACACAUCUAAGACAUC ...(((.((......(((....))).....)).)))...(((((((((.(((..(((......)))))).))))))))).................. ( -14.90) >DroSec_CAF1 68705 89 - 1 CUUUCUUUGCUUUCGUUGGCAACAAACA--------CACACACAAAUUUGUUACGGUCCCCGCACCAAUUGAUUUGUGUUUACACAUCUAAGACAUC ...((((((((......)))).......--------...(((((((((.(((..(((......)))))).)))))))))..........)))).... ( -14.50) >DroSim_CAF1 71476 87 - 1 CUUUCUUUGCUUUCGUUGGCAACAAACA--------C--ACACAAAUUUGUUACGGUCCCCGCACCAAUUGAUUUGUGUUUACACAUCUAAGACAUC ...((((((((......)))).......--------.--(((((((((.(((..(((......)))))).)))))))))..........)))).... ( -14.50) >DroEre_CAF1 73601 87 - 1 CUUUCUUUGCUUUCUUGGGCAGCAAACA--------C--ACACAAAUUUGUUACGGUCCCCGCACCAAUUGAUUUGUGUUUACACAUCUAAGACAUC ...(((((((((....))))).......--------.--(((((((((.(((..(((......)))))).)))))))))..........)))).... ( -14.80) >DroYak_CAF1 75934 87 - 1 CUUUCUUUGCUUUCUUUGGCAGCAAACA--------C--ACACAAAUUUGUUACGGUCCCCGCACCAAUUGAUUUGUGUUUACACAUCUAAGACAUC ...((((((((......)))).......--------.--(((((((((.(((..(((......)))))).)))))))))..........)))).... ( -14.50) >consensus CUUUCUUUGCUUUCGUUGGCAACAAACA________C__ACACAAAUUUGUUACGGUCCCCGCACCAAUUGAUUUGUGUUUACACAUCUAAGACAUC ...((((((((......))))..................(((((((((.(((..(((......)))))).)))))))))..........)))).... (-14.28 = -14.28 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:02 2006