Locus 2572

Sequence ID 2L_DroMel_CAF1
Location 7,122,351 – 7,122,461
Length 110
Max. P 0.790627
window4104

overview

Window 4

Location 7,122,351 – 7,122,461
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.75
Mean single sequence MFE -23.85
Consensus MFE -21.33
Energy contribution -21.13
Covariance contribution -0.19
Combinations/Pair 1.15
Mean z-score -1.53
Structure conservation index 0.89
SVM decision value 0.59
SVM RNA-class probability 0.790627
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7122351 110 - 22407834
UCCCAGCGCGAUUCCUGUUUGUUGUACAGUUGUGCACACACCGACUA-GUCAAGUUCGAA----AAAAUCGAAUAAUGGAUAAAAAAAAAAAU-----GCUGGGCAAAGAAAAAACUUGU
.(((((((.((((...(((((((((((....))))).)))..))).)-)))..((((((.----....))))))..................)-----))))))................ ( -25.30)
>DroSec_CAF1 63904 105 - 1
UCCCAGCGCGAUUCCUGUUUGUUGUACAGUUGUGCACACACCGACUA-GUCAAGUUCGAA----AAAAUCGAAUAAUGGAUAAA-----AAAU-----GCUGGGCAAAGAAAAAACUUGU
.(((((((.((((...(((((((((((....))))).)))..))).)-)))..((((((.----....))))))..........-----...)-----))))))................ ( -25.30)
>DroSim_CAF1 66203 105 - 1
UCCCAGCGCGAUUCCUGUUUGUUGUACAGUUGUGCACACACCGACUA-GUCAAGUUCGAA----AAAAUCGAAUAAUGGAUAAA-----AAAU-----GCUGGGCAAAGAAAAAACUUGU
.(((((((.((((...(((((((((((....))))).)))..))).)-)))..((((((.----....))))))..........-----...)-----))))))................ ( -25.30)
>DroEre_CAF1 68956 105 - 1
UCCCAGCGCGAUUCCUGUUUGUUGUACAGUUGUGCACACACCGACUA-GUCAAGUUCGAA----AAAAUCGAAUAAUGGAUAAA-----AAAU-----GCUGGGCAAAGAAAAAACUUGU
.(((((((.((((...(((((((((((....))))).)))..))).)-)))..((((((.----....))))))..........-----...)-----))))))................ ( -25.30)
>DroYak_CAF1 70810 105 - 1
UCCCAGCGCGAUUCCUGUUUGUUGUACAGUUGUGCACACAACGACUA-GUCAAGUUCGAA----AAAAUCGAAUAAUGGAUAAA-----AAAU-----GCUGGGCAAAGAAAAAACUUGU
.(((((((....(((......(((.((((((((.......)))))).-)))))((((((.----....))))))...)))....-----...)-----))))))................ ( -25.60)
>DroAna_CAF1 69607 117 - 1
UCCCAGCAUGAUUCUUGUUUGUUGUACAGUUGUGUACACAGUGACUAAGUCAAGUUCGCAAAAAAAAAGUGAAAAAGUGAAAAA---AAAAAUACAAAAUUGAGGAAAGAAAAAACUUGU
((((((((.(((....))))))))..(((((.(((((((..((((...))))..(((((.........)))))...))).....---.....)))).))))).))).............. ( -16.30)
>consensus
UCCCAGCGCGAUUCCUGUUUGUUGUACAGUUGUGCACACACCGACUA_GUCAAGUUCGAA____AAAAUCGAAUAAUGGAUAAA_____AAAU_____GCUGGGCAAAGAAAAAACUUGU
.((((((..(((....(((((((((((....))))).)))..)))...)))..((((((.........))))))........................))))))................ (-21.33 = -21.13 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:00 2006