Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,119,870 – 7,119,960 |
Length | 90 |
Max. P | 0.986403 |
Location | 7,119,870 – 7,119,960 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 76.04 |
Mean single sequence MFE | -31.54 |
Consensus MFE | -20.82 |
Energy contribution | -20.42 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.19 |
Mean z-score | -2.23 |
Structure conservation index | 0.66 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7119870 90 + 22407834 UCUGUCCUGCGGCAACAUGUUGCCGAUGGGCAGCUACAAUGUUGCU------GGGAGGAU---CGAGAUGAUGAAUUGCAGGUCACUCAAAAACUGGAC ...((((..(((((((((((((((....))))))....))))))))------).((((((---(..(((.....)))...)))).))).......)))) ( -33.50) >DroPse_CAF1 82793 96 + 1 UCCAAUCGCCGGCAACAUGUUGCCCACUGGCAGCCACAAUGUUGCCUCAACAUGGAUGAUAUACGAGACGAGCGUUUUUCGGGCUCU---AAACUUGUG ((((......((((((((((((((....))))))....))))))))......)))).....((((((..((((.(.....).)))).---...)))))) ( -30.80) >DroSec_CAF1 61392 90 + 1 UCUGUCCUGCGGCAACAUGUUGCCGAUGGGCAGCUACAAUGUUGCU------GGGAGGAU---CGAGAUGAUGAAUUGCAGGUCACUUAAAAACUGGAC ...((((..(((((((((((((((....))))))....))))))))------).((((((---(..(((.....)))...)))).))).......)))) ( -31.30) >DroSim_CAF1 63690 90 + 1 UCUGUCCUGCGGCAACAUGUUGCCGAUGGGCAGCUACAAUGUUGCU------GGGAGGAU---CGAGAUGAUGAAUUGCAGGUCACUUAAAAACUGGAC ...((((..(((((((((((((((....))))))....))))))))------).((((((---(..(((.....)))...)))).))).......)))) ( -31.30) >DroPer_CAF1 73567 96 + 1 UCCAAUCGCCGGCAACAUGUUGCCCACUGGCAGCCACAAUGUUGCCUCAACAUGGAUGAUAUACGAGACGAGCGUUUUUCGGGCUCU---AAACUUGUG ((((......((((((((((((((....))))))....))))))))......)))).....((((((..((((.(.....).)))).---...)))))) ( -30.80) >consensus UCUGUCCUGCGGCAACAUGUUGCCGAUGGGCAGCUACAAUGUUGCU______GGGAGGAU___CGAGAUGAUGAAUUGCAGGUCACU_AAAAACUGGAC .....(((((((((((((((((((....))))))....)))))))).................((...)).......)))))................. (-20.82 = -20.42 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:58 2006