Locus 257

Sequence ID 2L_DroMel_CAF1
Location 734,353 – 734,465
Length 112
Max. P 0.817110
window414

overview

Window 4

Location 734,353 – 734,465
Length 112
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 86.19
Mean single sequence MFE -30.70
Consensus MFE -20.58
Energy contribution -20.26
Covariance contribution -0.32
Combinations/Pair 1.09
Mean z-score -2.41
Structure conservation index 0.67
SVM decision value 0.67
SVM RNA-class probability 0.817110
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 734353 112 - 22407834
AACGGGAUUGUGCCAGUUCCAGUGC------CAGUGCCAAUCUAUCUCAAGUUGUACUUGAACAAAAAGUAUUGGGAAAUGCAUGAGAUAGAAAUGAAUGCCACCAAAUUAAACGAAA
...(((((((...))))))).(((.------((...(...(((((((((..((((......))))...(((((....))))).)))))))))...)..)).))).............. ( -25.90)
>DroSec_CAF1 5861 112 - 1
AACGGGAUUGUGCCAGUCCCAGUGC------CAGUGCCAAUCUAUCUCAAGUUGUACUUGGACAAAAACUAUUGGGAUUACCCUGAGAUAGAAAUUCAUGGCACCAAAUCAAAUGAAG
...(((((((...))))))).((((------((.......(((((((((..((((......))))........(((....))))))))))))......)))))).............. ( -35.82)
>DroSim_CAF1 5865 112 - 1
AACGGGAUUGUGCCAGUCCCAGUGC------CAGUGCCAAUCUAUCUCAAGUGGUACUUGGACAAAAACUAUUGGGAUUACCCUGAGAUAGAAAUUCAUGCCACCAAAUCAAAUGAAA
...(((((((...))))))).(((.------..(((....(((((((((((((((..((....))..))))))(((....))))))))))))....)))..))).............. ( -30.00)
>DroEre_CAF1 6097 117 - 1
AACGGGAUUGUGCCAGUCCCAGUGCCAGUGCCAGUGCCAAUCUAUCUCAAGUUGUACUUGGACAAAAACUAUUGGCAACGCAAUGAGAUGGAAACUCCUGCCACAGCAUA-AACGAAA
...(((((((...))))))).((((..(((.(((.(....(((((((((.(((((...(((.......)))...)))))....)))))))))....)))).))).)))).-....... ( -36.40)
>DroYak_CAF1 6282 112 - 1
AACGGGAUUGUGCCAGUCCCAGUGC------CAGUGCCAAUCUAUCUCAAGUUGUACUUGGACAAAAACUAUUGGGAAAUCAAUGAGAUAGAAAUUCUAGCCGCAAAAUAUAAAGAAA
...(((((((...))))))).((((------.((......((((((((...((((......)))).....(((((....)))))))))))))....)).).))).............. ( -25.40)
>consensus
AACGGGAUUGUGCCAGUCCCAGUGC______CAGUGCCAAUCUAUCUCAAGUUGUACUUGGACAAAAACUAUUGGGAAAACCAUGAGAUAGAAAUUCAUGCCACCAAAUAAAACGAAA
...(((((((...))))))).(..(........)..)...(((((((((((.....)))...(((......)))..........)))))))).......................... (-20.58 = -20.26 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:24 2006