| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,117,493 – 7,117,593 |
| Length | 100 |
| Max. P | 0.807717 |
| Location | 7,117,493 – 7,117,593 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 72.03 |
| Mean single sequence MFE | -22.18 |
| Consensus MFE | -9.89 |
| Energy contribution | -10.84 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7117493 100 + 22407834 GGGG--CUGGUCCU-GUUUUCCCUUUU----GCCCCCUUUGCCCUUUUCCCUGCCUACAUUUUCCCAUUUUCCAACUAUUUAUCCCAAAUAGAUGUGGGUCACAGGG ((((--(.((....-......))....----)))))............((((((((((((...............((((((.....)))))))))))))...))))) ( -24.66) >DroSec_CAF1 59074 90 + 1 GGGG--CUGGUCCC-GUUU-CCCUAUU----G---------CCCUUUUCCCUGCCUACAUUUUCCCAUUUUGCAACUAUUUAUCCCAAAUAGAUGUGGGUCACAGGG ((((--(.((....-....-.))....----)---------))))...((((((((((((...............((((((.....)))))))))))))...))))) ( -22.36) >DroSim_CAF1 61226 98 + 1 GGGG--CUGGUCCC-GUUU-CCCUAUU----GCC-CCUUUGCCCUUUUCCCUGCCUACAUUUUCCCAUUUUCCAACUAUUUAUCCCAAAUAGAUGUGGGUCACAGGG ((((--(.((....-....-.))....----)))-))...........((((((((((((...............((((((.....)))))))))))))...))))) ( -25.16) >DroEre_CAF1 64018 102 + 1 GGGG--CUGCUCCC-UUUU-UCCUUUUUCCUGCCCUUUUUGCCC-UUUCCCCGCCCACAUUUUCCCAUUUUCCAACUAUUUCCACCAAAUAGAUGUGGGUCACAGGG ((((--(.......-....-...........))))).....(((-(......((((((((((............................))))))))))...)))) ( -21.64) >DroYak_CAF1 65819 93 + 1 GGGGCGCUGGUCCC-UUUU-UCCAUUU----GCCCUUU--------UCCCCCGCCUACAUUUGCCCAUUUUCCAACUAUUUCCGCCAAAUAGAUGUGGGUCACAGGG ((((((.(((....-....-.)))..)----)))))..--------.(((..(((((((((((..........................)))))))))))....))) ( -22.67) >DroAna_CAF1 65437 80 + 1 GGGG--CUAUCUCUGGUCU-CCCUCUU----AAC---AAUACCAUUUU------------UUUUCCUUCCUCUG-----GGAUAACAAAUGAAUGUGGGUCACAGGG ((((--(((....))))))-)(((...----..(---(....(((((.------------((.((((......)-----))).)).)))))....))......))). ( -16.60) >consensus GGGG__CUGGUCCC_GUUU_CCCUUUU____GCC___UUUGCCCUUUUCCCUGCCUACAUUUUCCCAUUUUCCAACUAUUUAUCCCAAAUAGAUGUGGGUCACAGGG ((((......))))..................................(((.((((((((((............................))))))))))....))) ( -9.89 = -10.84 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:57 2006