Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,113,810 – 7,113,901 |
Length | 91 |
Max. P | 0.576507 |
Location | 7,113,810 – 7,113,901 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 85.19 |
Mean single sequence MFE | -17.43 |
Consensus MFE | -13.80 |
Energy contribution | -13.97 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.18 |
Mean z-score | -1.80 |
Structure conservation index | 0.79 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576507 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7113810 91 + 22407834 GCAAGAAAAUAAAAAAACCAAAAGGCUACAAAAGCAGCCAAAGCCAAAUGCCAGAGGCGAUAAAAUAGUUUAUGCUUGCUGGUUAUGUUUC .......................((((.(....).)))).((((.....(((((((((.(((((....))))))))).)))))...)))). ( -18.00) >DroSec_CAF1 55372 90 + 1 GCAGGAAAAUAAA-AAACCAAAAGGCUACAAAAGCAGCCAAAGCCAAAUGCCAGAGGCGAUAAAAUAGUUUAUGCUUGCUGCUUAUGUUUC .............-...((....))..(((.(((((((..((((....((((...))))(((((....)))))))))))))))).)))... ( -18.30) >DroSim_CAF1 57353 90 + 1 GCAGGAAAAUAAA-AAACCAAAAGGCUACAAAAGCAGUCAAAGCCAAAUGCCAGAGGCGAUAAAAUAGUUUAUGCUUGCUGCUUAUGUUUC .............-...((....))..(((.(((((((..((((....((((...))))(((((....)))))))))))))))).)))... ( -16.90) >DroEre_CAF1 60458 91 + 1 GCAGGAAAAUGCAAAAAACAAAAGGCUACAAAAGCAGCCAAAGCCAAAGGCCAAAGGCGAUAAAAUAGUUUAUGCUUGCUGCUUAUGUUUC (((......)))...............(((.(((((((....(((...)))...((((.(((((....)))))))))))))))).)))... ( -21.30) >DroYak_CAF1 62286 84 + 1 GCAGGAAAAUAAAAAAAAGA-------ACAAAAGCGGGCAAAGCCAAAUGCCAAAGGCGAUAAAAUAGUUUAUGCUUUCUGCUUAUGUUGC ...................(-------(((.(((((((((........)))).(((((.(((((....)))))))))).))))).)))).. ( -17.00) >DroAna_CAF1 59891 89 + 1 ACAAAAAAAGGCGAAAAU--ACAUGCCACAAAAGCAACAAAAGCCAAAUGCCAAAGGCGAUAAAAUAGUUUAUGUUCGCUGCUUAUACUUU .........((((((...--((.(((.......)))......(((..........))).........)).....))))))........... ( -13.10) >consensus GCAGGAAAAUAAAAAAACCAAAAGGCUACAAAAGCAGCCAAAGCCAAAUGCCAAAGGCGAUAAAAUAGUUUAUGCUUGCUGCUUAUGUUUC ...........................(((.(((((((..((((.....(((...))).(((((....)))))))))))))))).)))... (-13.80 = -13.97 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:56 2006