Locus 2567

Sequence ID 2L_DroMel_CAF1
Location 7,107,141 – 7,107,261
Length 120
Max. P 0.602697
window4099

overview

Window 9

Location 7,107,141 – 7,107,261
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.67
Mean single sequence MFE -51.70
Consensus MFE -33.40
Energy contribution -34.57
Covariance contribution 1.17
Combinations/Pair 1.26
Mean z-score -1.98
Structure conservation index 0.65
SVM decision value 0.14
SVM RNA-class probability 0.602697
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7107141 120 + 22407834
AAGAAGUGCAGCUCAACGUUGUGGGUGCUCUUGGCGGCACAAAUUUGGCUUCUGCUGGGGCAACAACCACUGUCCUCGCUGCAGCGAUGCAGGAUGGUGCAGUGAGGCGUAUAGAUCUUG
((((.((((...........((((.(((.((..((((..((....))....))))..)))))....)))).(.((((((((((.((........)).)))))))))))))))...)))). ( -42.50)
>DroVir_CAF1 71021 120 + 1
UUGAAAUGCCUUUCGAAUUUGUGGGUGCGUUUGGGGGCACAGAUCUCGUUGCGCUGGGGACAGCAGCCGCUGUCCUCGGCACAGCGAUAGACGCUGGUGCAGUGCGGCGAGUAGGUCUUC
...((((((((..((....))..)).))))))((((((......((((((((((((((((((((....))))))))).((((((((.....)))).)))))))))))))))...)))))) ( -56.60)
>DroPse_CAF1 68954 120 + 1
AAGAAAUGCAACUCAACGUUGUGGGUGCUCUUGGCGGCACAGAUCUGGGUGCGGCUGGGGCAGCAGCCGCUGUCCUCGCUGCAGCGGUGCAGGACGGUGCAGUGGGGCGUGUAGAUCUUC
((((..((((..........((((.((((((..((.((((........)))).))..))..)))).)))).((((.(((((((.((........)).))))))))))).))))..)))). ( -54.90)
>DroYak_CAF1 55805 120 + 1
AAGAAAUGCAGCUCAACGUUGUGGGUGCUCUUGGCGGCGCAGAUCUGGCUCCUGCUGGGGCAGCAACCACUGUCCUCGCUGCAGCGGUGCAGGAUGGUGCAGUGGGGCGUGUAGAUCUUG
((((..((((((((...(((((...(((.((..((((.((.......)).)).))..))))))))))((((((((((.(((((....))))))).)).)))))))))).))))..)))). ( -49.60)
>DroMoj_CAF1 66054 120 + 1
AAGAAAUACUUUUCGACUUUGUGGGUGCGCUUUGGGGCACAGAUCUCGGUGCGACUGUGGCAGCAGCCGCUGUCCUCGGAGCAACGGUGCACGAAGGUGCAGUGGGGGAAGUAGAUCUUG
((((..(((((..(..............((((((((((((.(....).))))(((.(((((....))))).)))))))))))..((.(((((....))))).)).)..)))))..)))). ( -51.70)
>DroPer_CAF1 59993 120 + 1
AAGAAAUGCAACUCAACGUUGUGGGUGCUCUUGGCGGCACAGAUCUGGGUGCGGCUGGGGCAGCAGCCGCUGUCCUCGCUGCAGCGGUGCAGGACGGUGCAGUGGGGCGUGUAGAUCUUC
((((..((((..........((((.((((((..((.((((........)))).))..))..)))).)))).((((.(((((((.((........)).))))))))))).))))..)))). ( -54.90)
>consensus
AAGAAAUGCAACUCAACGUUGUGGGUGCUCUUGGCGGCACAGAUCUGGGUGCGGCUGGGGCAGCAGCCGCUGUCCUCGCUGCAGCGGUGCAGGAUGGUGCAGUGGGGCGUGUAGAUCUUC
((((..((((..........((((.(((.((..((.(((..........))).))..))...))).))))...((((((((((.((........)).))))))))))..))))..)))). (-33.40 = -34.57 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:55 2006