Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,105,179 – 7,105,287 |
Length | 108 |
Max. P | 0.940306 |
Location | 7,105,179 – 7,105,287 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 87.08 |
Mean single sequence MFE | -17.38 |
Consensus MFE | -15.60 |
Energy contribution | -15.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.31 |
Structure conservation index | 0.90 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7105179 108 - 22407834 CCAGGGAACUCUAGUGGCCAUCAUUGUGGUCUUCAUUCCUCUUUCCCCUACCC-CUCUUCCACUUCAUGCCAUUUUCAGACAAUUUUCCGUUCCCUUCUUGCCAGAACC--- ..((((((((((((((((.......((((........................-.....)))).....))))))...))).........))))))).............--- ( -18.35) >DroSec_CAF1 47176 101 - 1 CCAGGGAACUCUAGUGGCCAUCAUUGUGGUCUUCUUCACUCCU-------CCC-CUCUUCACUCUCAUGCCAUUUUCAGACAAUUUUCCGUUCCCUUCUUGCCAGAACC--- ..((((((((((((((((.......((((..............-------...-....))))......))))))...))).........))))))).............--- ( -16.92) >DroSim_CAF1 48872 105 - 1 CCAGGGAACUCUAGUGGCCAUCAUUGUGGUCUUCUUCACUCCC-------CCCUCUCUUCACUCUCAUGCCAUUUUCAGACUAUUUUCCGUUCCCUUCUUGCCAGAACCACC ..((((((((((((((((.......((((..............-------........))))......))))))...))).........)))))))................ ( -16.87) >consensus CCAGGGAACUCUAGUGGCCAUCAUUGUGGUCUUCUUCACUCCU_______CCC_CUCUUCACUCUCAUGCCAUUUUCAGACAAUUUUCCGUUCCCUUCUUGCCAGAACC___ ..(((((((......((((((....))))))...............................................((......)).)))))))................ (-15.60 = -15.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:54 2006