Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,092,767 – 7,092,858 |
Length | 91 |
Max. P | 0.868785 |
Location | 7,092,767 – 7,092,858 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 95.75 |
Mean single sequence MFE | -18.28 |
Consensus MFE | -16.08 |
Energy contribution | -16.27 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.05 |
Mean z-score | -1.64 |
Structure conservation index | 0.88 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7092767 91 + 22407834 AGUCAGUGUGAAAUGGUUUUCAUAAAGGAAGUAAACUGAGCACUGGCGCACAUAUGCAAAACUUAAAAGGUGGUAAUAAAAAGCGCUAAUA .((((((((........((((......))))........))))))))(((....)))...........((((.(.......).)))).... ( -18.29) >DroSec_CAF1 34772 91 + 1 AGUCAGUGUGAAAUGGUUUUCAUAAAGGAAGUAAACUGAGCACUGGCGCACAUAUGCAAAACUUAAAAGGUGGUAAUAAAAAGCGCUAAUA .((((((((........((((......))))........))))))))(((....)))...........((((.(.......).)))).... ( -18.29) >DroSim_CAF1 35244 91 + 1 AGUCAGUGUGAAAUGGUUUUCAUAAAGGAAGUAAACUGAGCACUGGCGCACAUAUGCAAAACUUAAAAGGUGGUAAUAAAAUGCGCUAAUA .((((((((........((((......))))........))))))))((.(((.(((...(((.....))).))).....))).))..... ( -18.89) >DroEre_CAF1 38838 91 + 1 AGUCAGUGUGAAAUGGUUUUCAUAAAGGAAGUAAACUGAGCACUGGCGCACAUAUGCAAAACUAAAGAGGUGGUAAUAAAAAGCGCUAAUA .((((((((........((((......))))........))))))))(((....)))...........((((.(.......).)))).... ( -18.29) >DroYak_CAF1 39868 91 + 1 AGUCAGUGUGAAAUGGUUUUCAUAAAGGAAGUAACCUGAGCACUGGCGCACAUAUGCAAAACUUAAAAGGUGGUAAUAAAAAGCGCUAAUA .((((((((.....(((((((......)))..))))...))))))))(((....)))...........((((.(.......).)))).... ( -20.70) >DroAna_CAF1 37742 91 + 1 AGUCAGUGUGAAAUGCUUUUCAUAAAGGAAGUAAACCAAACACCGGCGCACAUAUGCAAAACUUAAGAGGUGGUAAUGAAAAGAGCUAAUA .(((.((((....(((((((......)))))))......)))).)))(((....))).............((((..(....)..))))... ( -15.20) >consensus AGUCAGUGUGAAAUGGUUUUCAUAAAGGAAGUAAACUGAGCACUGGCGCACAUAUGCAAAACUUAAAAGGUGGUAAUAAAAAGCGCUAAUA .((((((((........((((......))))........))))))))(((....)))...........((((...........)))).... (-16.08 = -16.27 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:52 2006