Locus 2563

Sequence ID 2L_DroMel_CAF1
Location 7,089,695 – 7,089,795
Length 100
Max. P 0.965601
window4095

overview

Window 5

Location 7,089,695 – 7,089,795
Length 100
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 76.09
Mean single sequence MFE -30.31
Consensus MFE -18.35
Energy contribution -18.79
Covariance contribution 0.44
Combinations/Pair 1.15
Mean z-score -2.14
Structure conservation index 0.61
SVM decision value 1.58
SVM RNA-class probability 0.965601
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7089695 100 + 22407834
GGUGCUCAGAAUGAGUUGUUUAACUCAAAA---------CUGAACGCUGUGCACGUGAGUCAAACAAUGAUCUCAUACCGCGGCCUUCAAAAUGCGUCGCUCGCAUCCC
((((.((((..((((((....))))))...---------)))).))))((((..((((((((.....))).)))))...((((((........).)))))..))))... ( -30.40)
>DroSec_CAF1 31708 105 + 1
GGUGCCUAGAAUGAGUUGUUUGACUCAAAGCCAAA-AUCCUGAACGCUGUGCACGUGAGUCAAACAAUGGUCUCAUACCUCGGCCUUCAAAAGGCGUCGCUCGC---CC
((.(((.((.(((((((((((((((((..((((..-...........)).))...))))))))))))....)))))..)).)))))......((((.....)))---). ( -32.62)
>DroSim_CAF1 32169 105 + 1
GGUGCCUAGAAUGAGUUGUUUGACUCAAAGCCAAA-AUCCUGAACGCUGUGCACGUGAGUCAAACAAUGAUCUCAUACCUCGGCCUUCAAAAGGCGUCGCUCGC---CC
((.(((.((.(((((((((((((((((..((((..-...........)).))...))))))))))))....)))))..)).)))))......((((.....)))---). ( -32.62)
>DroEre_CAF1 35588 108 + 1
GGUGCCUAGAGUUAGUUGUGUGGCUCAAAUAAAAACAUUCUGAAAGCUGUGCACUUGAGGCAAACAAUGAUCUCAUGCCUCGGCCUUCAGAAGAUGCCACUCCA-UCAC
(((..((.((((((......))))))............((((((.((((.(((..(((((((.....)).))))))))..)))).))))))))..)))......-.... ( -30.70)
>DroYak_CAF1 36641 90 + 1
GGUGCUCAUAGUGAGUUGUUUGACUUAAACCCAAA-AU---------------CCUGAGUCAAACAAUGAUCUCAUGCCUCGGCCUUCAAAAAGAGCCACUCAA-AC--
(((((((...(((((((((((((((((........-..---------------..))))))))))))....)))))((....)).........))).))))...-..-- ( -25.20)
>consensus
GGUGCCUAGAAUGAGUUGUUUGACUCAAAGCCAAA_AU_CUGAACGCUGUGCACGUGAGUCAAACAAUGAUCUCAUACCUCGGCCUUCAAAAGGCGUCGCUCGC__CCC
((((...(((....(((((((((((((............................)))))))))))))..)))..))))..((((((....))).)))........... (-18.35 = -18.79 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:51 2006