Locus 2562

Sequence ID 2L_DroMel_CAF1
Location 7,084,350 – 7,084,447
Length 97
Max. P 0.695403
window4094

overview

Window 4

Location 7,084,350 – 7,084,447
Length 97
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 80.21
Mean single sequence MFE -16.58
Consensus MFE -9.08
Energy contribution -9.92
Covariance contribution 0.84
Combinations/Pair 1.17
Mean z-score -2.01
Structure conservation index 0.55
SVM decision value 0.34
SVM RNA-class probability 0.695403
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7084350 97 + 22407834
UUUUACGCGAAGUUGUGAAAUGCAAUUAUUGUAAAUUUGUGCUUCAUCAACUUUGUCAAUUCAUUUUUUUUUUCGAUGAGCCUAU-AAUUUUUCAUUU
......(((((((((((((..((((...........))))..)))).)))))))))...((((((.........)))))).....-............ ( -17.50)
>DroSec_CAF1 26166 90 + 1
UUUUACGCGAAGUUGUGAAAUGCAAUU-----AAAUUUGUGC-UCAUCAACUUUGACAAUUCAUUUG--UUUUCGAUGAGCCUAUUAAUUUUUCAUUU
..............((((((.((((..-----....))))((-(((((......(((((.....)))--))...))))))).........)))))).. ( -17.20)
>DroSim_CAF1 26321 90 + 1
UUUUACGCGAAGUUGUGAAAUGCAAUU-----AAAUUUGUGC-UCAUCAACUUUGUCAAUUCAUUUG--UUUUCGAUGAGCCUAUUAAUUUUUCAUUU
......((((((((((((...((((..-----....))))..-))).)))))))))...((((((..--.....)))))).................. ( -15.70)
>DroEre_CAF1 29915 83 + 1
-UUUACGUGCAGUUGUGAAAUGUUU----------UUUUUGUUUCACCAACAUUGUCAAUUUAUUU---UUUUCGAUGAGCAA-CUGAUUUAUUUUGU
-........(((((((((((((...----------....)))))).....(((((..((.......---))..))))).))))-)))........... ( -13.80)
>DroYak_CAF1 30686 88 + 1
UUUUACGUGCAGUUGUGAAAUGUAAUU-----AAAUUUGUGUUUCAUCAGCUUUGUCAAUUUAUUU---UAUUCGAUGAGCA--CUUAUUUUUUGUUU
......((((((((((((((..(((..-----....)))..))))).)))))(..(((((......---.))).))..))))--)............. ( -18.70)
>consensus
UUUUACGCGAAGUUGUGAAAUGCAAUU_____AAAUUUGUGCUUCAUCAACUUUGUCAAUUCAUUU___UUUUCGAUGAGCCUAUUAAUUUUUCAUUU
......(((((((((((((.(((((...........))))).)))).)))))))).)..((((((.........)))))).................. ( -9.08 =  -9.92 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:50 2006