Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,081,605 – 7,081,697 |
Length | 92 |
Max. P | 0.700795 |
Location | 7,081,605 – 7,081,697 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.28 |
Mean single sequence MFE | -25.26 |
Consensus MFE | -15.22 |
Energy contribution | -15.62 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.14 |
Mean z-score | -1.95 |
Structure conservation index | 0.60 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700795 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7081605 92 + 22407834 GCGACAG-----CAUUGUGCUGAUAAGCGAUUAAUCGCAGAAUCUAAAAAUGAUUGUCGUCAGCUUUGGGGAAAUCCGAAGCUAUGUAUAU------AUUCAA (((((((-----((((.....(((..((((....))))...)))....)))).))))))).(((((((((....)))))))))........------...... ( -28.00) >DroSec_CAF1 23433 88 + 1 GCGACGG-----CCUUGGGCUGAUAAGCGAUUAAUCGCAGAAUCUAAAAAUGAUUGUCGCCAGCUUUGGGGAAAUCCAACGCUA----UAC------UUUUAA (((((((-----((...)))).....((((....))))..((((.......))))))))).(((.(((((....))))).))).----...------...... ( -25.40) >DroSim_CAF1 23604 88 + 1 GCGACGG-----CCUUGGGCUGAUAAGCGAUUAAUCGCAGAAUCUAAAAAUGAUUGUCGCCAGCUUUGGGGAAAUCCAACGCUA----UAU------UUUUAA (((((((-----((...)))).....((((....))))..((((.......))))))))).(((.(((((....))))).))).----...------...... ( -25.40) >DroEre_CAF1 27108 91 + 1 ACCCAGGCUGAACCUUGGGCUGAUAAGCGAUUAAUCGCAGAAUCUAAAAGUGAUUGUCGCCGG--UUGGGGAAAUCCAAAGCUA----UAU------GUUCAU .((((((......))))))(..((..(((((.((((((...........)))))))))))..)--)..)((....)).......----...------...... ( -24.60) >DroYak_CAF1 27935 92 + 1 ACGCAGG-----CCUUGGACUGAUAAGCGAUUCAACGCAGAAUCUAAAAGUGAUUGUCGCCCGCUUUGGGGAAAUCCAAAGCAA----UAUUAAACUGUUA-- ..((((.-----....((..........(((((......))))).....(((.....)))))((((((((....))))))))..----.......))))..-- ( -22.90) >consensus GCGACGG_____CCUUGGGCUGAUAAGCGAUUAAUCGCAGAAUCUAAAAAUGAUUGUCGCCAGCUUUGGGGAAAUCCAAAGCUA____UAU______GUUCAA .................(((.(((..(((......)))..((((.......))))))))))(((.(((((....))))).))).................... (-15.22 = -15.62 + 0.40)
Location | 7,081,605 – 7,081,697 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 81.28 |
Mean single sequence MFE | -23.44 |
Consensus MFE | -12.42 |
Energy contribution | -14.02 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.10 |
Mean z-score | -2.10 |
Structure conservation index | 0.53 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7081605 92 - 22407834 UUGAAU------AUAUACAUAGCUUCGGAUUUCCCCAAAGCUGACGACAAUCAUUUUUAGAUUCUGCGAUUAAUCGCUUAUCAGCACAAUG-----CUGUCGC ......------.......((((((.((......)).)))))).((((...........(((...((((....))))..)))(((.....)-----)))))). ( -22.30) >DroSec_CAF1 23433 88 - 1 UUAAAA------GUA----UAGCGUUGGAUUUCCCCAAAGCUGGCGACAAUCAUUUUUAGAUUCUGCGAUUAAUCGCUUAUCAGCCCAAGG-----CCGUCGC ......------...----((((.((((......)))).))))(((((...........(((...((((....))))..))).(((...))-----).))))) ( -24.90) >DroSim_CAF1 23604 88 - 1 UUAAAA------AUA----UAGCGUUGGAUUUCCCCAAAGCUGGCGACAAUCAUUUUUAGAUUCUGCGAUUAAUCGCUUAUCAGCCCAAGG-----CCGUCGC ......------...----((((.((((......)))).))))(((((...........(((...((((....))))..))).(((...))-----).))))) ( -24.90) >DroEre_CAF1 27108 91 - 1 AUGAAC------AUA----UAGCUUUGGAUUUCCCCAA--CCGGCGACAAUCACUUUUAGAUUCUGCGAUUAAUCGCUUAUCAGCCCAAGGUUCAGCCUGGGU ......------...----..(((((((......))))--..)))..............(((...((((....))))..))).(((((.((.....))))))) ( -21.90) >DroYak_CAF1 27935 92 - 1 --UAACAGUUUAAUA----UUGCUUUGGAUUUCCCCAAAGCGGGCGACAAUCACUUUUAGAUUCUGCGUUGAAUCGCUUAUCAGUCCAAGG-----CCUGCGU --.............----..(((((((((((((((.....))).))............(((...(((......)))..))))))))))))-----)...... ( -23.20) >consensus UUAAAA______AUA____UAGCUUUGGAUUUCCCCAAAGCUGGCGACAAUCAUUUUUAGAUUCUGCGAUUAAUCGCUUAUCAGCCCAAGG_____CCGUCGC ...................((((.((((......)))).))))(((((...........(((...(((......)))..))).......((.....))))))) (-12.42 = -14.02 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:49 2006