Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,077,707 – 7,077,801 |
Length | 94 |
Max. P | 0.986323 |
Location | 7,077,707 – 7,077,801 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 91.81 |
Mean single sequence MFE | -21.86 |
Consensus MFE | -18.14 |
Energy contribution | -18.70 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -2.18 |
Structure conservation index | 0.83 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986323 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7077707 94 + 22407834 GAGUUCAGUGGCUCGAGUUCAUUGAAUGAUUACACUGCAAAUCUUUCAUUGAAAAGCAUGAAUACAAUUCAUUCAUGUGACGACUCAUAAAAUG ((((......))))(((((((.((((.((((........)))).)))).)))...((((((((.......))))))))....))))........ ( -22.50) >DroSec_CAF1 19512 94 + 1 GAGUUCAGUGGCUCGAGUUCAUUGAAUGAUUACACUGCUAAUCUUUCAUUGAAAAGCAUGAAUACAAUUCAUUCAUGUGACUACUCAUAAAAUG ((((......))))(((((((.((((.(((((......))))).)))).)))...((((((((.......))))))))....))))........ ( -23.50) >DroSim_CAF1 19682 94 + 1 GAGUUCAGUGGCUCGAGUUCAUUGAAUGAUUACACUGCGAAUCUUUCAUUGAAAAGCAUGAAUACAAUUCAUUCAUGUGACUACUCAUAAAAUG ((((......))))(((((((.((((.((((........)))).)))).)))...((((((((.......))))))))....))))........ ( -22.40) >DroEre_CAF1 23427 92 + 1 GAGUUCAGUGGCUCGAGUUUAUUGAAUGAUUACACAGCAAAUCUUUCAUUGAAAAUAAUGAAUACAAUGCAUUCAUG--ACGACUCAUCAAAUA ((((......))))(((((...((((((......).(((.....(((((((....))))))).....))))))))..--..)))))........ ( -17.10) >DroYak_CAF1 24171 94 + 1 GAGUUCAGUGGCUGGAGUUCAUUGAGUGACUACACUGCUAAUCUUUCAUUGAAAAGAAUGAAUAAAAUUCAUUCAUGCUACGACUCAUUAAAUG (((((..(((((.....((((.((((.((.((......)).)).)))).))))..((((((((...))))))))..))))))))))........ ( -23.80) >consensus GAGUUCAGUGGCUCGAGUUCAUUGAAUGAUUACACUGCAAAUCUUUCAUUGAAAAGCAUGAAUACAAUUCAUUCAUGUGACGACUCAUAAAAUG ((((......))))(((((((.((((.((((........)))).)))).)))...((((((((.......))))))))....))))........ (-18.14 = -18.70 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:47 2006