Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,074,563 – 7,074,657 |
Length | 94 |
Max. P | 0.578190 |
Location | 7,074,563 – 7,074,657 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 77.25 |
Mean single sequence MFE | -16.82 |
Consensus MFE | -9.40 |
Energy contribution | -10.07 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.26 |
Mean z-score | -1.62 |
Structure conservation index | 0.56 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578190 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7074563 94 - 22407834 AGAAAAAAUGGCACAAAUGUUUUAAUAUUUUAUGGGUGAAAAAAAUGUAUGUGUAACAGCAGAGCUACUGCACAUUGUGCAAUAAUAAUGAAAG ..........((((((........(((((((.(......).))))))).((((((..(((...)))..)))))))))))).............. ( -16.90) >DroSec_CAF1 16433 93 - 1 AGAAAAAAUGGCACAAAUGUUUUAAUACUUUAUGGGUGAAA-AAAUGCAUGUGUAACAGCGGAGCUACUGCACAUUGUGCAAUAAUAAUGAAAG ..........((((((.(((.....(((..((((.((....-..)).)))).)))...((((.....))))))))))))).............. ( -18.30) >DroSim_CAF1 16617 93 - 1 AGAAAAAAUGGCACAAAUAUUUUAAUACUUUAUGGGUGAAA-AAAUGCAUGUGCAAGAGCGGAGCUACUGCACAUUGUGCAAUAAUAAUGAAAG ..........((((((.((((((..((((.....))))..)-)))))..((((((..(((...)))..)))))))))))).............. ( -21.50) >DroEre_CAF1 20269 91 - 1 AGAAAAAAUGGCACAGCGUUUUUAAUACUUUAUGGGUGAAA-AAAU--AUGUGUAAAUGCGGGGCUCCUGCACAUUGUGCAAUAAUAAUGAAAG ..........(((((..((((((..((((.....)))).))-))))--.)))))...((((((...))))))((((((......)))))).... ( -19.80) >DroYak_CAF1 20235 91 - 1 AGAAAAAACGGCGAAAUUUUUGUAAUAUUUUAUGGGUGAAA-AAAU--AUGCGCAAAAGCGGAGCUCCUGCACAUUGUGCAAUAAUAAUGAGAG .................((((((.(((((((.........)-))))--))..))))))((((.....)))).((((((......)))))).... ( -14.80) >DroPer_CAF1 21350 72 - 1 A---CAAUUUCCACAAAAUGGUAAAUGUUUCAUGGGGAGUAAAACC--AUAUG----------------GCA-AUAGUGCAAUAAUAAUGAAAG .---..(((((((.....))).)))).((((((.((........))--.(((.----------------(((-....))).)))...)))))). ( -9.60) >consensus AGAAAAAAUGGCACAAAUUUUUUAAUACUUUAUGGGUGAAA_AAAU__AUGUGUAAAAGCGGAGCUACUGCACAUUGUGCAAUAAUAAUGAAAG ..........((((((.........((((.....))))...........((((((..(((...)))..)))))))))))).............. ( -9.40 = -10.07 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:46 2006