Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,064,186 – 7,064,280 |
Length | 94 |
Max. P | 0.610746 |
Location | 7,064,186 – 7,064,280 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 78.25 |
Mean single sequence MFE | -29.67 |
Consensus MFE | -19.49 |
Energy contribution | -18.69 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.40 |
Mean z-score | -1.29 |
Structure conservation index | 0.66 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7064186 94 + 22407834 UCCCGCCGAAGGUUGGA----CGCA-------AUAAUGUGGUGGUACAUCGGCAGUUUCUAA-UCACUUUCAUUGUAGAUUUCCGCGUUGGCGACGACGAGGAAGA ..((((((...((((..----..))-------))....))))))((((..((.(((......-..))).))..))))..(((((.(((((....))))).))))). ( -28.00) >DroSec_CAF1 7027 94 + 1 UCCCGCCGAAGGUUGGU----CACU-------AUAAUGUGGUGGUACAUCGGCAUUUUCUAA-UGACUAUCAUUGUAGAUUUCCGCGUUGGCGACGAUGAGGAAGA ..(((.(....).))).----..((-------(((..((((((((.(((..(......)..)-))))))))))))))).(((((.(((((....))))).))))). ( -28.00) >DroSim_CAF1 6750 94 + 1 UCCCGCCGAAGGUUGGU----CACU-------AUAAUGUGGUGGUACAUCGGCAUUUUCUAA-UGACUAUCAUUGUAGAUUUCCGCGUUGGCGACGACGAGGAAGA ..(((.(....).))).----..((-------(((..((((((((.(((..(......)..)-))))))))))))))).(((((.(((((....))))).))))). ( -29.80) >DroEre_CAF1 7007 91 + 1 UCCCGCCGAAGGUUGGU----CACU-------GUAAUGUG---UAACAUCGGCAGUUUCUAA-CCAUUUUCAUUGCAGAUUUCCGUGUUGGCGACGAUGAGGAGGA ..((.((...((((((.----.(((-------((.(((..---...)))..)))))..))))-))....((.((((.(((......))).)))).))...)).)). ( -25.70) >DroYak_CAF1 6855 91 + 1 UCCCGCCGAAGGUUGGU----CACU-------GUAAUGUG---GUACAUCGGCAGUUUGUAA-UAAUUUUUAUUGCAGAUUUCCGUGUUGGCGACGACGAGGAGGA ..(((((((..((...(----(((.-------.....)))---).)).)))))(((((((((-((.....)))))))))))(((.(((((....))))).))))). ( -31.00) >DroPer_CAF1 7362 106 + 1 UCCGGCUGAAGGUGAGACCGCCGCUUUUGGCUUCCAUUCCAUUCCAGAGCAGCAAUUGCAAAAACAUUGUUAUUGCAGACUUCCGUGUCGGCGACGACGAGGAGGA ...(((..((((((.......))))))..)))...................(((((.((((.....)))).)))))...(((((.(((((....))))).))))). ( -35.50) >consensus UCCCGCCGAAGGUUGGU____CACU_______AUAAUGUGGUGGUACAUCGGCAGUUUCUAA_UCACUUUCAUUGCAGAUUUCCGCGUUGGCGACGACGAGGAAGA ....(((((....((......(((.............)))......)))))))..........................(((((.(((((....))))).))))). (-19.49 = -18.69 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:42 2006