Locus 2554

Sequence ID 2L_DroMel_CAF1
Location 7,056,386 – 7,056,506
Length 120
Max. P 0.987611
window4079

overview

Window 9

Location 7,056,386 – 7,056,506
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.08
Mean single sequence MFE -40.27
Consensus MFE -34.34
Energy contribution -34.50
Covariance contribution 0.16
Combinations/Pair 1.12
Mean z-score -2.02
Structure conservation index 0.85
SVM decision value 2.09
SVM RNA-class probability 0.987611
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7056386 120 + 22407834
ACCUGGUCUGUCGCGCAAUAAAACCGCCCAAUUGGUGCCGAAAUUACGGCACAGAUAAUGCGCGAAUCAAUUGGCAUACGGCGCGAUGAGAUAAUCGGUCGAUUCGGGCGGCAAAAAGCA
..............((.......((((((.....((((((......)))))).((..((((.(((.....))))))).((((.((((......))))))))..))))))))......)). ( -39.42)
>DroSec_CAF1 25008 120 + 1
ACCUGGUCUGCCGCGCAAUAAAACCGCCCAAUUGCUGCCGAAAUUACGGCACAGAUAAUGUGCGAAUUAAUUGGCAUACGGCGCGAUGAGAUAAUCGGUCGAUUCGGGCGGCAAAAGGCA
....((....))..((.......((((((......((((((((((...(((((.....))))).))))..))))))..((((.((((......))))))))....))))))......)). ( -41.12)
>DroSim_CAF1 24592 120 + 1
ACCUGGUCUGUCGCGCAAUAAAACCGCCCAAUUGCUGCCGAAAUUACGGCACAGAUAAUGCGCGAAUUAAUUGGCAUACGGCGCGAUAAGAUAAUCGGUCGAUUCGGGCGGCAAAAGGCA
..............((.......((((((..(((.(((((......))))))))...((((.(((.....))))))).((((.((((......))))))))....))))))......)). ( -37.02)
>DroEre_CAF1 25843 119 + 1
ACCUGGUUCGUCGCGCAAUAAAACCGCUUAAUU-GUGCCGAAAUCACGGCACAGAUAAUGCGCGAGUCAAUUGGAAUACGGCGCGAUGAGAUAAUCGGUCGAUUGGGGCGGCAAAUGGCA
.((..(((((((((((........((((((.((-((((((......)))))))).))).)))((..((.....))...)))))))))))(((.....))).))..))((........)). ( -41.30)
>DroYak_CAF1 25909 120 + 1
ACCUGGUGCGUCGCGCAAUAAAACCGCCCAAUUGGUGUCGAAAUUACGGCACAGAUAAUGCGCGAAGCAAUUGGAAUACGGCGCGAUGAGAUAAUCGGUCGAUUCGGGCGGCAAAAGGCA
.(((.((((...)))).......((((((.(((.((((((......)))))).)))..(((.....)))....((((.((((.((((......))))))))))))))))))....))).. ( -42.50)
>consensus
ACCUGGUCUGUCGCGCAAUAAAACCGCCCAAUUGGUGCCGAAAUUACGGCACAGAUAAUGCGCGAAUCAAUUGGCAUACGGCGCGAUGAGAUAAUCGGUCGAUUCGGGCGGCAAAAGGCA
..............((.......((((((.(((.((((((......)))))).))).((((.(((.....))))))).((((.((((......))))))))....))))))......)). (-34.34 = -34.50 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:36 2006