Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,056,239 – 7,056,346 |
Length | 107 |
Max. P | 0.698500 |
Location | 7,056,239 – 7,056,346 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.78 |
Mean single sequence MFE | -34.54 |
Consensus MFE | -25.35 |
Energy contribution | -26.28 |
Covariance contribution | 0.93 |
Combinations/Pair | 1.17 |
Mean z-score | -1.70 |
Structure conservation index | 0.73 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7056239 107 + 22407834 UUCGAAAAUACCAAACC-UAGC-----------UGCAUGCAGCCAAGUGCGAUGCUUUGCAACACUGC-CAGCCAUUUCGGCACGUGCUGGGUGUGGACACACUGGCACGCAGCGAAGUA .................-..((-----------(((..((((.....(((((....)))))...))))-..(((.....)))..((((..((((....))).)..)))))))))...... ( -37.60) >DroSec_CAF1 24861 107 + 1 UUUGAAAAUACCAAACC-AAGC-----------UGCUUGCAGCCAAAAGCGAUACUUUGCAACACUGC-CAGCCAUUUCGGCACGUGCUGGGUGUGGACACACUGGCACGCAGCGAAGUA .................-..((-----------((....)))).........((((((((........-..(((.....))).(((((..((((....))).)..)))))..)))))))) ( -34.90) >DroSim_CAF1 24445 107 + 1 UUUGAAAAUACCAAACC-AAGC-----------UGCUUGCAGCCAAAAGCGAUACUUUGCAACACUGC-CAGCCAUUUCGGCACGUGCUGGGUGUGGACACACUGGCACGCAGCGAAGUA .................-..((-----------((....)))).........((((((((........-..(((.....))).(((((..((((....))).)..)))))..)))))))) ( -34.90) >DroEre_CAF1 25684 119 + 1 UUCGAAAAUACCAAAACCUACCGCAACUGUUAGUGCUUGCAGCCGAGUGCGAAACUGUUCAACACUGC-UACCCAUUUCGGCACGUGCUGGGUGUGGACACACUGGCACGCAGCGAGGUA ...............((((...(.(((.(((.(..((((....))))..)..))).))))..(.((((-...((.....))...((((..((((....))).)..)))))))).))))). ( -33.90) >DroYak_CAF1 25763 106 + 1 UUCAAAAAUACCAAAACCUACCGCAACUUUUAG--------------UGCGAAACUUUGCAACACUGCCCACCCAUUUCGGCACGUGCUGGGUGUGGACACACUGGCACGCAGCGAGGUA .....................((((........--------------))))..(((((((.....((((..........))))(((((..((((....))).)..)))))..))))))). ( -31.40) >consensus UUCGAAAAUACCAAACC_UAGC___________UGCUUGCAGCCAAAUGCGAUACUUUGCAACACUGC_CAGCCAUUUCGGCACGUGCUGGGUGUGGACACACUGGCACGCAGCGAAGUA ..................................((((........))))...(((((((...........(((.....))).(((((..((((....))).)..)))))..))))))). (-25.35 = -26.28 + 0.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:34 2006