Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,052,650 – 7,052,747 |
Length | 97 |
Max. P | 0.500000 |
Location | 7,052,650 – 7,052,747 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 85.02 |
Mean single sequence MFE | -39.07 |
Consensus MFE | -27.49 |
Energy contribution | -27.88 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.19 |
Mean z-score | -2.25 |
Structure conservation index | 0.70 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7052650 97 - 22407834 GGCACACCAGAGGGCUGGGCUGGAUAACCGUCAUCCGACUGGGAGUUGAGACUCUCGCUUGACAGAGUUUUAACUCCCAGAGAUUGAUUGCUACCGC ((((..((((....))))..(((((.......))))).(((((((((((((((((........)))))))))))))))))........))))..... ( -38.50) >DroPse_CAF1 24784 97 - 1 GGCACACCAGAGGGCUGGGCUGGAUAACCGUCAUCGGACUGGGAGUUGAGGCUCUCGUUGCUGAGAGUUUUAACGCCCAACGACUGAUUGCCACCGC ((((..((((....))))...((....))(((((((...((((.(((((((((((((....))))))))))))).)))).))).))))))))..... ( -39.70) >DroSec_CAF1 21273 97 - 1 GGCACACCAGAGGGCUGGGCUGGAUAACCGUCAUCCGACUGGGAGUUGAGACUCUCGCUUGACAGAGUUUUAACUCCCAGAGAUUGAUUGCUACCGC ((((..((((....))))..(((((.......))))).(((((((((((((((((........)))))))))))))))))........))))..... ( -38.50) >DroMoj_CAF1 24209 95 - 1 GGCACGCCAGAAGGCUGCGCCGGAUAGCCAUCAUCCGACUGCGAGUUAAGGCUUUCGCUUGAGAGCGUCUUCAGGCCCAGCGAAUUGCUGCUGCC-- ((((.(((.((((((..((((((((.......)))))...))).......((((((....)))))))))))).))).((((.....)))).))))-- ( -35.60) >DroAna_CAF1 20541 97 - 1 GGCACACCAGAAGGCUGGGCUGGGUAGCCGUCAUCGGACUGGGAGUUGAGACUUUCGUUGGAUAGAGUUUUAACGCCCAGUGAUUGAUUGCUACCGC ..((..((((....))))..))((((((.((((....((((((.(((((((((((........))))))))))).))))))...)))).)))))).. ( -42.40) >DroPer_CAF1 24401 97 - 1 GGCACACCAGAGGGCUGGGCUGGAUAACCGUCAUCGGACUGGGAGUUGAGGCUCUCGUUGCUGAGAGUUUUAACGCCCAACGACUGAUUGCCACCGC ((((..((((....))))...((....))(((((((...((((.(((((((((((((....))))))))))))).)))).))).))))))))..... ( -39.70) >consensus GGCACACCAGAGGGCUGGGCUGGAUAACCGUCAUCCGACUGGGAGUUGAGACUCUCGCUGGAGAGAGUUUUAACGCCCAGCGAUUGAUUGCUACCGC ((((..((((....))))...((....))((((((...(((((.(((((((((((........))))))))))).))))).)).))))))))..... (-27.49 = -27.88 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:33 2006