Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,048,809 – 7,048,899 |
Length | 90 |
Max. P | 0.741618 |
Location | 7,048,809 – 7,048,899 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -22.95 |
Consensus MFE | -13.72 |
Energy contribution | -13.75 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.07 |
Mean z-score | -2.15 |
Structure conservation index | 0.60 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741618 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7048809 90 + 22407834 AUUCGUGGAAAUACGAAUCUCAGAAUCUCAGAAUAGGUACGCAGAAAAUUACCCGCGUAGUUUUUCGCGCCCUAACCAUGAAUGGGAUUA .((((((....))))))(((((.....(((...((((..(((..((((((((....))))))))..))).))))....))).)))))... ( -24.20) >DroPse_CAF1 20743 78 + 1 -UUCGUGGAAAUUUG--UCU---------CGGUCUUGUACGCGGAAAAUUACCCACGUAGUUUUCCGCGCCCUAUUCAUGAAUGGGAUUA -.(((.(((......--)))---------))).......(((((((((((((....))))))))))))).((((((....)))))).... ( -25.00) >DroEre_CAF1 17975 79 + 1 GUUCUUGGAAAUACG--UCU---------GAAAUAGCUACGCAGAAAAUUACCCGCGUAGUUUUUCGCGCCCUAACCAUGAAUGGGAUUA ((((.(((......(--(.(---------((((.((((((((.(........).))))))))))))).)).....))).))))....... ( -19.60) >DroYak_CAF1 18056 79 + 1 AUUCGUGGAAAAACG--UCU---------GAAAUAGCUACGCAGAAAAUUACCCGCGUAGUUUUUCGCGCCCUAACCAUGAAUGGGAUUA ((((((((......(--(.(---------((((.((((((((.(........).))))))))))))).)).....))))))))....... ( -23.20) >DroAna_CAF1 16700 79 + 1 AUUCGCGGAAUUCUG--UAU---------CAAUGUGGUACGCGGAAAAUUCCCCGGGUAGUUUUUCGCGCCCUAUUCAUGAAUGGGAUUA ........(((((((--(.(---------((..((((..(((((((((((((...)).)))))))))))..))))...))))))))))). ( -23.60) >DroPer_CAF1 20334 78 + 1 -UUCGUGGAAAUUUG--UCU---------CGGUCUUGUACGCGGAAAAUUACCCACGUAGUUUUUCGCGCCCUAUUCAUGAAUGGGAUUA -.(((.(((......--)))---------))).......(((((((((((((....))))))))))))).((((((....)))))).... ( -22.10) >consensus AUUCGUGGAAAUACG__UCU_________CAAAUAGGUACGCAGAAAAUUACCCGCGUAGUUUUUCGCGCCCUAACCAUGAAUGGGAUUA .......................................(((.(((((((((....))))))))).)))(((...........))).... (-13.72 = -13.75 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:32 2006