Locus 2550

Sequence ID 2L_DroMel_CAF1
Location 7,045,442 – 7,045,534
Length 92
Max. P 0.726853
window4075

overview

Window 5

Location 7,045,442 – 7,045,534
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 75.65
Mean single sequence MFE -22.83
Consensus MFE -12.27
Energy contribution -12.68
Covariance contribution 0.42
Combinations/Pair 1.18
Mean z-score -1.75
Structure conservation index 0.54
SVM decision value 0.41
SVM RNA-class probability 0.726853
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7045442 92 + 22407834
UUUUCAGUUCGACUAGCCAGCAGCAGCAGCAGCGGGGGCUUUAUGUUGGCCAUCUCAUGUUGGCCAUUCAUUUGGCACAACCGUUAGUAACU
.....((((..((((((..((.((....)).))((..(((..(((.((((((........))))))..)))..)))....)))))))))))) ( -29.70)
>DroPse_CAF1 16684 76 + 1
-GUUUAGGUUGAGUUGGUAGCU---------------CUUUUAUGUUGGUCAUCUCAUGUUUGCCGUUCAUUUGGCACAACCGUUAGCAGUC
-(((..(((((((..(.((((.---------------.......)))).)...))).....(((((......))))).))))...))).... ( -16.80)
>DroSec_CAF1 14131 84 + 1
------GUUCGACUAGCCAGCAGCAG--UCAGCAGCGGCUUUAUGUUGGCCAUCUCAUGUUGGCCGUUCAUUUGGCACAACCGUUAGUAACU
------.....(((((((((((..((--((......))))...)))))))........((((((((......)))).))))...)))).... ( -26.00)
>DroEre_CAF1 14504 71 + 1
------GUUCGACUAGCCAGCAG---------------CUUUAUGUUGGCCAUCUCAUGUUGGCCGUUCAUUUGGCACAACCGUUAGUAUCU
------.....(((((((((((.---------------.....)))))))........((((((((......)))).))))...)))).... ( -22.10)
>DroYak_CAF1 14556 71 + 1
------GUUCGACUGGCCAGCAG---------------CUUUAUGUUGGCCAUCUCAUGUUGGCCGUUCAUUUGGCACAACCGUUAGUAUCU
------....((.(((((((((.---------------.....)))))))))))....((((((((......)))).))))........... ( -25.60)
>DroPer_CAF1 16301 76 + 1
-GUUUAGGUUGAGUUGGUAGCU---------------CUUUUAUGUUGGUCAUCUCAUGUUUGCCGUUCAUUUGGCACAACCGUUAGCAGUC
-(((..(((((((..(.((((.---------------.......)))).)...))).....(((((......))))).))))...))).... ( -16.80)
>consensus
______GUUCGACUAGCCAGCAG_______________CUUUAUGUUGGCCAUCUCAUGUUGGCCGUUCAUUUGGCACAACCGUUAGUAACU
..........((...(((((((.....................)))))))..))....((((((((......)))).))))........... (-12.27 = -12.68 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:31 2006