Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,043,400 – 7,043,507 |
Length | 107 |
Max. P | 0.549320 |
Location | 7,043,400 – 7,043,507 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 80.92 |
Mean single sequence MFE | -22.94 |
Consensus MFE | -9.66 |
Energy contribution | -11.30 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.14 |
Mean z-score | -2.16 |
Structure conservation index | 0.42 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7043400 107 - 22407834 UAAAAUUGAUCACUUCCACAUGGAUUGUUUUUUUUGUUCCAGCCUGACCUUUGCGCUUUGUUUAUUUGUGUUCUUAACACAGAGAUACAAAUUAGCAUCUGUUAGGA (((((..(((....(((....)))..)))..)))))......((((((...(((..(((((...(((((((.....)))))))...)))))...)))...)))))). ( -26.40) >DroSec_CAF1 12095 100 - 1 UAAAGUUGAUCACUUCCACGUGGAUUGUUUUU-----UCCAGCCUGACCUUUG--CUUUGUUUAUUUGUGUUCUUAGCACAGAUAUACAAAUAAGCAUCUGUAAGGA ....((.((.....)).)).((((........-----)))).(((.((...((--((((((.(((((((((.....))))))))).)))...)))))...)).))). ( -25.20) >DroSim_CAF1 12062 100 - 1 UACAAUUGAUCACUUCCACAUGGAUUGUUUUU-----UCCAGCCUGACCUUUG--CUUUGUUUAUUUGUGUUCUUAGCACAGAUAUACAAAUUAGCAUCUGUAAGGA ....................((((........-----)))).(((.((...((--((((((.(((((((((.....))))))))).))))...))))...)).))). ( -24.40) >DroEre_CAF1 12436 81 - 1 --AAAUUGAUCACAUCCACAUGGAUUGAU---------------GGACCUUUG--CUCUGCUUAUUUGUGUUCUUAGCAGAGUGCUACAAAUUAGCAUCU------- --...((.((((.((((....))))))))---------------.)).....(--(((((((.............))))))))((((.....))))....------- ( -21.92) >DroYak_CAF1 12332 99 - 1 CAAAAUUGAUCACUUCCACAUGUUUUGUUU-U-----UCCAGCCUGACCUUUG--CUUUGUUUACUUGUGUGCUUAGCAGAGUGCCACAAAUUAGCAUCUGUAAGGA ((((((.((.....)).....))))))...-.-----...........(((((--(..((((...(((((..(((....)))..).))))...))))...)))))). ( -16.80) >consensus UAAAAUUGAUCACUUCCACAUGGAUUGUUUUU_____UCCAGCCUGACCUUUG__CUUUGUUUAUUUGUGUUCUUAGCACAGAGAUACAAAUUAGCAUCUGUAAGGA ..............(((....))).......................((((.......((((.(((((((((((......))).)))))))).)))).....)))). ( -9.66 = -11.30 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:31 2006